Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq17000 98.7 5e-16 seq39496 91.5 8e-14 seq13161 87.8 9e-13 seq42036 86.0 3e-12 >seq17000 Length=2756 Score = 98.7 bits (108), Expect = 5e-16 Identities = 79/95 (83%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 11437 AATTAATAAAAAA-TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||| || |||||| | |||||||| | || |||||||||| |||||||||||||||| Sbjct 2101 AATAAAAAAAAAAGTTAAATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATT 2160 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||| |||| |||||||| | |||| Sbjct 2161 AGCACGACGCTCTAACCAGCTGAGCTATGGAGCCG 2195 Score = 91.5 bits (100), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| | || ||||| | || |||||||||| |||||||||||||||||||||||| Sbjct 119 AAAAAGTTAATTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGAC 178 Query 11504 GCTCTRACCAACTGAGCTA 11522 ||||| |||| |||||||| Sbjct 179 GCTCTAACCAGCTGAGCTA 197 >seq39496 Length=934 Score = 91.5 bits (100), Expect = 8e-14 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || || |||| ||||||| | || |||||||||| ||||||||||||||||||||| Sbjct 677 AAAAATAAATTTAATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCAC 736 Query 11501 GACGCTCTRACCAACTGAGCTA 11522 |||||||| |||| |||||||| Sbjct 737 GACGCTCTAACCAGCTGAGCTA 758 >seq13161 Length=4315 Score = 87.8 bits (96), Expect = 9e-13 Identities = 79/99 (80%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 11433 ATAGAATTAATAAAAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 ||| |||| | ||||||| || ||| | || |||||||||| |||||||||||| Sbjct 1268 ATATAATTTAAAAAAAATATTTTTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGT 1209 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||| |||| |||||||| | |||| Sbjct 1208 TATTAGCACGACGCTCTAACCAGCTGAGCTATGGAGCCG 1170 >seq42036 Length=1199 Score = 86.0 bits (94), Expect = 3e-12 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| ||| |||| | || |||||||||| |||||||||||||||||||||||| Sbjct 1011 AAAAAGAGAAACTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGAC 952 Query 11504 GCTCTRACCAACTGAGCTA 11522 ||||| |||| |||||||| Sbjct 951 GCTCTAACCAGCTGAGCTA 933 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261328513903648