Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq20012 132 4e-26 seq50967 120 3e-22 seq42053 113 4e-20 seq3519 107 2e-18 seq20890 82.4 7e-11 >seq20012 Length=3655 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 ||||||||||| ||| | ||||||||||| || | ||||| || || || Sbjct 2497 TCGCAACACCAGGTGAAGGGTAGATTCCTTCTGAATATTATAGTCAGACAACGTACGACC 2556 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||||||||||||||| ||| | ||||| | | ||||||||||| |||||||||||||| Sbjct 2557 ATCCTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATACCTTCTTT 2616 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || |||||||| || ||| ||||||| | | ||||| || | || || Sbjct 2617 ATCCTGGATCTTTGCCTTCACATTTTCGATGGTGTCAGAGGGCTCGACCTCGAGAGTTAT 2676 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| || ||||| || || |||||||| Sbjct 2677 GGTCTTCCCAGTGAGCGTTTTGACGAAAATCTGCAT 2712 >seq50967 Length=297 Score = 120 bits (132), Expect = 3e-22 Identities = 162/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||| || ||||||||||| |||| ||| ||||| || || | ||| | Sbjct 72 TTTGCATGCCTCCTCGCAGACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGT 131 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 |||| || ||| ||| |||||||| |||||| | ||||| | | || |||| Sbjct 132 AATCCGACAAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGAT 191 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| || || |||||||| || | ||| |||||||||||| ||| || || | Sbjct 192 CTGGCGGGATTCCTTCTTTATCCTGAATCTTTGCCTTGACGTTCTCGATCGTATCGGATG 251 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 | || || || | ||||| ||||| || || |||||||| || || Sbjct 252 GCTCCACCTCGAGAGTGATCGTTTTGCCGGTCAGAGTTTTGACGAA 297 >seq42053 Length=1259 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||||||||| || || ||||| || | ||| || ||| || ||| ||||| Sbjct 1217 ACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCA 1158 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || | ||||| || | ||||||||||| ||||| ||||| ||||| | Sbjct 1157 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 1098 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || || || || ||| ||| || | | ||||| || | |||||||| || Sbjct 1097 ATCTTAGCTTTCACATTCTCGATAGTATCCGAAGGCTCGACCTCCAGAGTGATGGTCTTG 1038 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 ||||| ||||| ||||| ||||||||||| || Sbjct 1037 CCAGTCAGAGTCTTCACGAAGATCTGCATACT 1006 >seq3519 Length=1813 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 |||||||| ||| ||||||||||| |||| ||| ||||| || || | ||| ||||| Sbjct 1618 TCCTCCTCGCAAACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGA 1677 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || ||| ||| |||||||| |||||| | ||||| | | || |||||||| || Sbjct 1678 CAAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGG 1737 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 || ||||| || || | ||| |||||||||||| Sbjct 1738 GATTCCTTCCTTATCCTGAATCTTTGCCTTGACG 1771 >seq20890 Length=2679 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| | || || | | ||||||||||| || ||||| || ||| Sbjct 1482 TCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGGATACCCTCCTTG 1541 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || || || || ||| || || | | | || || |||| || ||| Sbjct 1542 TCCTGGATCTTGGCTTTCACATTCTCGATCGTATCCGAGGGTTCAACCTCAAGGGTAATG 1601 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || |||||||| ||||||||||| Sbjct 1602 GTCTTACCCGTGAGGGTTTTCACGAAGATCTGCAT 1636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448005145385280