Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq25372 185 1e-42 seq50969 170 3e-38 seq2157 170 3e-38 seq148 170 3e-38 seq50984 132 8e-27 seq3616 98.7 2e-16 >seq25372 Length=4232 Score = 185 bits (204), Expect = 1e-42 Identities = 201/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | |||||| ||||||||||| || || |||||||| || ||| Sbjct 2956 GCCAAGCGTCACCGAAAGGTTCTTCGCGATAACATCCAGGGTATTACCAAGCCCGCCATC 3015 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || || ||||||||||| |||||| | || || | |||||||||| | Sbjct 3016 CGTCGTCTTGCCCGCCGTGGTGGAGTGAAGCGTATTTCCGGCCTCATCTATGAAGAAACC 3075 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | ||||| | | ||| |||| |||||| || ||| ||||| Sbjct 3076 CGAGGTGTACTGAAGGTTTTCCTGGAAAACGTAATCCGTGATGCCGTCACCTACACCGAA 3135 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| |||||||| | || || || |||| || || || Sbjct 3136 CACGCCAAGCGCAAGACGGTCACCGCCATGGATGTGGTGTACGCGCTGAAGCGCCAGGGA 3195 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || || |||||| ||||| Sbjct 3196 CGTACGCTGTACGGATTTGGAGGTTAA 3222 >seq50969 Length=339 Score = 170 bits (188), Expect = 3e-38 Identities = 198/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | | | || ||||||||||| || |||||||||||||| ||| Sbjct 296 GCCAAGCGTCACCGTAAAGTGTTACGTGATAACATCCAGGGCATCACCAAGCCAGCCATC 237 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||| || |||||||| |||||||| |||| || | |||| || || | Sbjct 236 CGCCGTCTGGCGCGCCGTGGTGGTGTCAAGCGCATCTCCGGTCTCATCTACGAGGAAACC 177 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||||| ||| ||| |||| ||| || || || |||||| Sbjct 176 CGTGGTGTGCTGAAGGTGTTCCTGGAGAACGTCATCCGTGACGCGGTCACGTACACCGAG 117 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || || || |||||| | |||||| |||| || || | || || || || Sbjct 116 CACGCCAAGCGCAAAACCGTCACCGCGATGGATGTCGTTTACGCGCTCAAGCGCCAGGGA 57 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || ||||||||| ||||| Sbjct 56 CGCACGCTCTACGGTTTTGGAGGTTAA 30 >seq2157 Length=6562 Score = 170 bits (188), Expect = 3e-38 Identities = 196/264 (74%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 16436 AAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGT 16495 |||||||| || | | | || ||||||||||| || |||||||||||||| ||||| Sbjct 6560 AAGCGTCACCGTAAAGTGTTACGTGATAACATCCAGGGCATCACCAAGCCAGCCATCCGC 6501 Query 16496 CGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGT 16555 |||||||| || |||||||| |||||||| |||| || | |||| || || | ||| Sbjct 6500 CGTCTGGCGCGCCGTGGTGGTGTCAAGCGCATCTCCGGTCTCATCTACGAGGAAACCCGT 6441 Query 16556 GATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCAC 16615 | ||| ||||| | ||||| ||| ||| |||| ||| || || || ||||||||| Sbjct 6440 GGTGTGCTGAAGGTGTTCCTGGAGAACGTCATCCGTGACGCGGTCACGTACACCGAGCAC 6381 Query 16616 GCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGT 16675 || || || || || |||||| | |||||| |||| || || | || || || || || Sbjct 6380 GCCAAGCGCAAAACCGTCACCGCGATGGATGTCGTTTACGCGCTCAAGCGCCAGGGACGC 6321 Query 16676 AAGATTTATGGTTTTGGAAGTTAA 16699 | | | || ||||||||| ||||| Sbjct 6320 ACGCTCTACGGTTTTGGAGGTTAA 6297 >seq148 Length=2757 Score = 170 bits (188), Expect = 3e-38 Identities = 198/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | | | || ||||||||||| || |||||||||||||| ||| Sbjct 2448 GCCAAGCGTCACCGTAAAGTGTTACGTGATAACATCCAGGGCATCACCAAGCCAGCCATC 2507 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||| || |||||||| |||||||| |||| || | |||| || || | Sbjct 2508 CGCCGTCTGGCGCGCCGTGGTGGTGTCAAGCGCATCTCCGGTCTCATCTACGAGGAAACC 2567 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||||| ||| ||| |||| ||| || || || |||||| Sbjct 2568 CGTGGTGTGCTGAAGGTGTTCCTGGAGAACGTCATCCGTGACGCGGTCACGTACACCGAG 2627 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || || || |||||| | |||||| |||| || || | || || || || Sbjct 2628 CACGCCAAGCGCAAAACCGTCACCGCGATGGATGTCGTTTACGCGCTCAAGCGCCAGGGA 2687 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || ||||||||| ||||| Sbjct 2688 CGCACGCTCTACGGTTTTGGAGGTTAA 2714 >seq50984 Length=491 Score = 132 bits (146), Expect = 8e-27 Identities = 188/267 (70%), Gaps = 12/267 (4%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | | | || ||||||||||| || |||||||||||||| ||| Sbjct 236 GCCAAGCGTCACCGTAAAGTGTTACGTGATAACATCCAGGGCATCACCAAGCCAGCCATC 295 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||| |||||||| |||| || | |||| || || | Sbjct 296 CGCCGT------------GGTGGTGTCAAGCGCATCTCCGGTCTCATCTACGAGGAAACC 343 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||||| ||| ||| |||| ||| || || || |||||| Sbjct 344 CGTGGTGTGCTGAAGGTGTTCCTGGAGAACGTCATCCGTGACGCGGTCACGTACACCGAG 403 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || || || |||||| | |||||| |||| || || | || || || || Sbjct 404 CACGCCAAGCGCAAAACCGTCACCGCGATGGATGTCGTTTACGCGCTCAAGCGCCAGGGA 463 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || ||||||||| ||||| Sbjct 464 CGCACGCTCTACGGTTTTGGAGGTTAA 490 >seq3616 Length=3655 Score = 98.7 bits (108), Expect = 2e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 16481 AAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTC 16540 |||||||| ||||| |||||||| || |||||||| |||||||| |||| || | || Sbjct 1 AAGCCAGCCATCCGCCGTCTGGCGCGCCGTGGTGGTGTCAAGCGCATCTCCGGTCTCATC 60 Query 16541 TATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTC 16600 || || || | |||| ||| ||||| | ||||| ||| ||| |||| ||| || || Sbjct 61 TACGAGGAAACCCGTGGTGTGCTGAAGGTGTTCCTGGAGAACGTCATCCGTGACGCGGTC 120 Query 16601 CACTATACCGAGCACGCTAAACGTAAGACTGT 16632 || ||||||||||| || || || || || Sbjct 121 ACGTACACCGAGCACGCCAAGCGCAAAACCGT 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79028526456264