Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1636 475 4e-129 seq38620 122 1e-22 >seq1636 Length=7642 Score = 475 bits (526), Expect = 4e-129 Identities = 1248/1888 (66%), Gaps = 40/1888 (2%) Strand=Plus/Minus Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGAT---GCGGGTTTCGTACGTAGATAGTACATT 61897 ||||||| ||||| ||||||| || | || || || ||||| | |||||||| Sbjct 5995 TTGTCCACCGTGAACTGAATGG---CGTTTACCGCCGGCTTGGTACGCAAGTAGTACATG 5939 Query 61898 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 61957 |||||||| || || | |||| ||||| ||||| || || || ||| |||| || Sbjct 5938 CCCGTTTTAAGGCCCATCTTCCAGCCGTAGAAATGGATCGATGTCAGCTTGCCATAATTC 5879 Query 61958 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62017 || || || | || || || | || || |||||| || || ||||| | ||| || Sbjct 5878 GGTTCAGCCACGTGAATGTTGAACGACTGTGATTGATCTATAAACGCTCCTCGGTCGGCG 5819 Query 62018 GCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAAT 62076 ||||| || || || ||| || || ||||| | ||||| |||| || | ||| Sbjct 5818 GCCATCTTGATGGAAGTTTTTACTGATATCTCCCAGACCGTTTTGTAAATGTCACG-AAT 5760 Query 62077 ATCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTT 62133 |||| |||| | ||| ||||| || ||||| | |||| ||| | | | Sbjct 5759 CTCTTGGGGAATTTCCGTAATTTTCTGGATCGATCCGTTGTGCGCCAGAATTCGGTGTCT 5700 Query 62134 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 62193 || ||||| | ||| || | ||| || || | | |||||||| |||| || || Sbjct 5699 CATATCATCGTCCCACAAGCCACACTCCGTCAAGTCCTTCAGGAGATGGTGATTCACCAC 5640 Query 62194 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGA 62253 |||||||||||| |||| || | || | | |||| || || |||||||| | || Sbjct 5639 TTGAAATTCTCCCGACAGGACGCGCCTATTATAAACGTTCGATGTGTACGGTTCGAAGGA 5580 Query 62254 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 62313 |||||| || ||||||||||| || ||||| || |||||||| ||||||| || || | Sbjct 5579 CTCATTGTTGCCCAAAATTTGTGCGGTTGAAGCCGTCGGCATCGGTGCCAACAGTAGAGA 5520 Query 62314 ATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 62371 ||| | || || ||| | | || || ||||| | |||| ||||| || ||| Sbjct 5519 ATTGCGAATGCC--ATGCTTGGCAATCTTCTCTTTCAATTCCGCCCAGTTCCACAGGTCC 5462 Query 62372 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTAC 62430 | ||| || | ||||| || || | | | | ||| | Sbjct 5461 GTAGGTGTCTTGTTCCACATATCGTACTGCAAGATACCCTTGCTTACCGGGCTA-CCTTC 5403 Query 62431 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 62490 || || ||||||||||| || |||| | || || || ||||| || |||||||| Sbjct 5402 GTACGTCTCGTATGGTCCGTCACGGGCAGCCAACTCGCAGCTAGCCTCCAAGGCACCGTA 5343 Query 62491 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATA 62550 || || ||||| || || | || ||| || | ||| || ||| || || |||| || Sbjct 5342 GTAGATTGTTTCAAACATTTGCTGATTGAGTTTTTGGGCCTCCTCACTCTCGTATGGGTA 5283 Query 62551 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62610 | || |||||||| || || | ||||| |||||||||||||| || || || | Sbjct 5282 TCGCATCAGGATAAACGCATCGGCCATACCTTGCACACCAATACCGATGGGCCTGTGGCG 5223 Query 62611 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 62670 | | || || || || |||| ||||| || || || || || ||||| || | Sbjct 5222 CATGTTCGAACGACGCGCCTCCGGAACCGGATAGTAGTTGATGTCGATGATTTTGTTCAA 5163 Query 62671 ATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC 62727 |||| | || | ||| | | ||||| ||||||||| |||||| | | ||| Sbjct 5162 GTTTCGCGTTACGGT--CTTAG-CGACATCTTTCAGTTTGCCAAAATCGTACGTACGATC 5106 Query 62728 ---TATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGC 62784 | | ||||||||||| || || | ||||| ||||| || ||||| | ||| | | Sbjct 5105 CGATCTCACAAACATGTTTAACGCGATCGATGCAAGATTGCACACGGCAATCTCGT---C 5049 Query 62785 ATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 62841 | | | || | | ||||| |||||||| || ||||| || || || | || Sbjct 5048 CTTTGAAGAGTACTCCACGATCTCCGTGCAAAGGTTTGAGCACTTTATTGTGCCCACGTT 4989 Query 62842 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 62901 ||| || || |||||| ||||||||||||||| || || ||| | || || ||||| Sbjct 4988 TTGCTGGTTGCTCTTTCGGTTACACGCATCCTTGTACAGCATGTACGGCACGCCGGTTTC 4929 Query 62902 AATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA-TTATAGATTTGTATC 62960 | ||| ||||| || || || ||| | | | | ||||||| || || | Sbjct 4928 CACCTGTGATTCAATTATGGCAAACCACAGGTCCTGCGCCTTTACTTGGCGAATAAAGCG 4869 Query 62961 TCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 63020 | || || | ||||| ||| | |||||||| || ||||| || || Sbjct 4868 ACCTTCCT-TCTCGTAGCCCTCGTACCGTTTCTCGAACTCTTCGCCCCACGAATCAGACA 4810 Query 63021 GTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 63080 ||| || || |||| ||| ||||| | |||| | ||| | ||| |||||| |||| Sbjct 4809 ATCCGGGGCAATCATGCGGGCACATAAGACTCCACATTTCGTTAGCCTCCACTCGCTTCA 4750 Query 63081 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT---TCCTCGT 63137 | || | ||| || |||||||| || ||| | | || ||| | | | || ||||| | Sbjct 4749 TGAATAAATCCGGTATCCAAAGGGC-ATAGA-ACATGTCTCGCGC-ACGTACCTCCTCCT 4693 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 | ||||| |||||||| |||||||| ||| | | | |||| |||||||| |||| || Sbjct 4692 TCCCTGTGTTCTTTTTCAGATCGAGAAACTCGAACACATCACCGTGCCACGGCTCCAGGT 4633 Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257 | || || | |||| || || || || ||||| ||||| | ||| | || ||||||| Sbjct 4632 AGATTGCAAATGCTCCGGGTCGCTTATTGCCTCCTTGATCGACGTACCGCGCCGTGTTAT 4573 Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317 | || || | | ||| || | | ||||||||| | ||||| || || | ||| || Sbjct 4572 TGTACACGCGAAGCATCGGCACCAAACCATTGGAGATTCCATTTGTGCCCGCGATGTACG 4513 Query 63318 TTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63377 |||| | ||||| ||| | | || || || || || || || || || | Sbjct 4512 TTCCCTTCGCACGGATACAATGCACGTTCAGCCCAATGCCACCGGCTGACTTTGATATCA 4453 Query 63378 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 63437 ||||| |||| | |||||| ||||| || || || || || || ||| | | | Sbjct 4452 GGGCGCACTGTTTCAGCGTATCGTAGATACCGTCAATGCTGTCGTCGGACATCGTCAACA 4393 Query 63438 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63497 | || ||| ||| | || |||| || ||||| ||| | || |||||||| | Sbjct 4392 GGAAGCAGGAAGAAAGCTGCGGACGTTGTGTCGCCGCAGCAAACATAGTTGGAGAAGCAT 4333 Query 63498 GAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63557 | || || || || || || |||||||||||||| || || | || |||||| Sbjct 4332 GGGTGAAAAATCGCTCCGACAGCAGATTGTACGTCTCGATGGCCGCATCGATATCCTCGC 4273 Query 63558 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 63617 ||||| || | || || ||||| | ||| ||||| || | ||| ||||||||| | Sbjct 4272 CGTGAATACCGATGGCAACGCGCATCAGCATATGCTGGGGACGTTCGACGATCTTGCCCT 4213 Query 63618 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63677 | ||||| | || ||||||| |||||||||||||| || ||||| || || ||||| Sbjct 4212 TAATTTTGAGCAGGTAGGATCGCTCCAAAGTTTTAAAGCCGAAATAATTATAGCCAAAGT 4153 Query 63678 CTCGTTCGTAAATAATAACCGAGTTGAG 63705 | || ||||||||||| |||| ||||| Sbjct 4152 CGCGATCGTAAATAATGGCCGAATTGAG 4125 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 63814 AAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGC 63873 |||| | || |||||||||||||||||||| || ||||||| | ||| || || || || Sbjct 3736 AAATTGCTTCTTTGTTTCTTTGTGTAGATTGGAAACGGCTAAACGAGCCGCAAGGATCGC 3677 Query 63874 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 63933 ||| || | ||||| || || || || ||| |||| ||||| | |||| | || Sbjct 3676 ATAGTCAGCATGTTCAGTTGTCATTGTTGCAGCTGTTTCCGCTGCTAAGCTGTCAAGCTC 3617 Query 63934 TACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCA 63974 | || || ||||| |||| | || | ||||||||||| Sbjct 3616 TTGAGTCGTAACACCTGTATAGAGCCCATTGATAACCTTCA 3576 >seq38620 Length=1898 Score = 122 bits (134), Expect = 1e-22 Identities = 183/258 (71%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 32648 TTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTT 32707 ||| ||||| | ||| || || |||||||| || || ||||| | || | ||||| Sbjct 25 TTTGAACATGAGACAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGCGAGATCAGCTCGTT 84 Query 32708 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 32767 || ||||||||||| ||||| | ||| ||||| |||||||| || |||| |||||| Sbjct 85 CGAGAACGTGAGTCCTGGCATCAAGCCGCGCTTCTTAAGCCAGAAAATGGCCGCAAAACT 144 Query 32768 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 32827 || || || || || || || || || ||||||| || | || ||| | ||| Sbjct 145 ACCGCTGAAAAAGATACCCTCCACGGCAGCGAAGGCAACAACCCGTTCACCAAAGTTGGC 204 Query 32828 --GCTGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 32884 || | || ||||| || |||||||||||||||||||||| || || || | || Sbjct 205 CTTCTTGCTTGAGATCCAGTTCAGAGCCCAATCGGCCTTCTTTTTCACGCACGGTAGCGT 264 Query 32885 CTCTATAGCATTAAAGAG 32902 ||| || || ||||| || Sbjct 265 CTCGATCGCGTTAAACAG 282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633227679420800