Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2949 125 6e-24 seq20012 102 7e-17 >seq2949 Length=10021 Score = 125 bits (138), Expect = 6e-24 Identities = 304/454 (67%), Gaps = 10/454 (2%) Strand=Plus/Plus Query 50998 TTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTCTTTGAACGGC 51057 || ||||| |||||||||| || | || | ||||| || | ||| ||||| | | | Sbjct 8950 TTGCAGCCTTCGTAGTTCATGTATCGAATCTTTCCAAATATATCGCGCTCTTTCCA-GCC 9008 Query 51058 CTG-TCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAGGATCGCGACC 51116 ||| || || | ||| || ||||||||||| || || || ||| |||||||| || Sbjct 9009 CTGATCATGGATACCCGCGATCGACCACATACAGCCAACGTACCCGTTTGGATCGCGTCC 9068 Query 51117 ATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGTCTGCACTAGG 51176 ||| | ||||| | ||||| ||| | ||||| | | | ||| || | | Sbjct 9069 ATCGAGACTGTACCGGTCGTTCAGATAGATGGCTGATTCGAGCGCCTCTTCAGGCGTTTT 9128 Query 51177 CGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATCTTGCCCTC 51236 |||||||| | |||||||| ||||||||||| |||| | | |||||||| ||||| || Sbjct 9129 GGTCCATTCGAGGATTTTCTTCGCCCAGTACATTCGCAGGAAGCCGTGCATTTTGCCTTC 9188 Query 51237 GCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAGTTTGGCAACTTGCCAG 51296 | ||| ||||||||||||||||| |||||||| |||| | || | || Sbjct 9189 CTTTACCATCTGTAGCTGAGCCGAGTTCCACAAGTCGTCGTGTGTTTTGGCCGTTTCAAG 9248 Query 51297 CTCTGTCAAATTGTAAATGTATGAGCGATGATCGTATTTGTGTTGCTCG---ATCGTTTC 51353 ||| | |||| ||| || | ||| ||| | || ||| | ||| | Sbjct 9249 CTCGTCCCGCGTGTAGCAATATACTCGTTTATC---CTTGCGGTGGTCGTTCAACGTCTT 9305 Query 51354 TTGAGCCCA-TTGTGGTGCGCCTTCAACACAGTCGTAGCGGTCGTTGTAGAAACAAAAAT 51412 |||||||| | || | || |||| || || ||| | ||| | ||||||||| | Sbjct 9306 CTGAGCCCACTCGTAG-GCTCCTTTAAGGTTATCATAGTTTTTGTTATGGAAACAAAAGT 9364 Query 51413 TGTCGGCCAGTTCGCGGCGTACCACGACTTCGTC 51446 |||| | ||||||||| || || | | |||| || Sbjct 9365 TGTCCGACAGTTCGCGCCGCACGATGGCTTCCTC 9398 >seq20012 Length=3655 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 || ||| ||||| || || || || || | || || || |||| || |||| || | Sbjct 2720 ACAGAAAGATGCAGATTTTCGTCAAAACGCTCACTGGGAAGACCATAACTCTCGAGGTCG 2661 Query 25051 AGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 || | |||||||| ||||| ||||| ||| ||| || |||||||| ||||||| Sbjct 2660 AGCCCTCTGACACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAAGAAGGTATTCCAC 2601 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 | || || ||||| | || || ||||||||||| | || |||| ||| || || | Sbjct 2600 CAGATCAGCAGCGTCTGATCTTCGCCGGCAAACAGCTGGAGGATGGTCGTACGTTGTCTG 2541 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACA 25201 | || |||||||| || ||||| || || || Sbjct 2540 ACTATAATATTCAGAAGGAATCTACCCTTCA 2510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433058406068120