Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq9847 95.1 2e-14 seq47254 93.3 9e-14 seq13924 93.3 9e-14 seq8203 93.3 9e-14 seq3191 93.3 9e-14 seq34383 91.5 3e-13 seq17000 89.7 1e-12 seq3179 87.8 4e-12 >seq9847 Length=4602 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 2305 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2364 Query 142564 CCCACATCGGGCAGAAG 142580 ||||| | |||| |||| Sbjct 2365 CCCACGTTGGGCGGAAG 2381 >seq47254 Length=1109 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1035 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 976 Query 142563 CCCCACATCGGGCAGA 142578 |||||| | |||| || Sbjct 975 CCCCACGTTGGGCGGA 960 >seq13924 Length=3127 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || ||||||| |||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 2955 GACAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 2896 Query 142560 GAGCCCCACATCGGGC 142575 ||||||||| | |||| Sbjct 2895 GAGCCCCACGTTGGGC 2880 >seq8203 Length=2425 Score = 93.3 bits (102), Expect = 9e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1210 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1151 Query 142563 CCCCACATCGGGC-AGAA 142579 |||||| | |||| |||| Sbjct 1150 CCCCACGTTGGGCGAGAA 1133 >seq3191 Length=5702 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || ||||||| |||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 4323 GACAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 4264 Query 142560 GAGCCCCACATCGGGC 142575 ||||||||| | |||| Sbjct 4263 GAGCCCCACGTTGGGC 4248 >seq34383 Length=3954 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1253 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1194 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1193 CCCCACGTTGGGC 1181 >seq17000 Length=2756 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 2677 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2736 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 2737 CCCACGTTGGGC 2748 >seq3179 Length=6791 Score = 87.8 bits (96), Expect = 4e-12 Identities = 182/268 (68%), Gaps = 6/268 (2%) Strand=Plus/Minus Query 218741 TGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTG 218800 |||||||| ||||||| || || |||||||| || |||| || |||||||||| Sbjct 3801 TGGCACAGAACTATGTCGGAAGCAACAACATTAATCTGCTTTATCCGGGTGGTCAGTTTG 3742 Query 218801 GTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGT 218860 || | ||||| ||| ||||| || || ||| | ||||| ||||| || | | ||| Sbjct 3741 GTACACGTCTTACGGGAGGAAAAGACAGCGCTAGCCCGAGGTACATCTTCACGATGATGT 3682 Query 218861 CGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGG 218920 | | |||||||||| | ||| | | | ||| ||| || || |||||| || Sbjct 3681 CCGCTCTGACGCGCCACATTTTCCACCCGCTCGACGATCCACTGCTGGAGTATC---AGA 3625 Query 218921 ACGATG--GTTCTTCG-ATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCG 218977 |||| | || || ||||| |||| ||||| |||| ||| || | |||| Sbjct 3624 ACGAGGACAATCAGCGCATTGAACCCGTTTGGTACTTGCCAATTATACCAATGCTGCTGA 3565 Query 218978 TAAATGGTGCCAATGGTATCGGGACAGG 219005 ||||||| || | |||||||| || || Sbjct 3564 TAAATGGAGCGGAAGGTATCGGTACTGG 3537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027164540771368