Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq20012 116 3e-21 seq50967 114 1e-20 seq42053 95.1 1e-14 seq3519 86.0 5e-12 >seq20012 Length=3655 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 |||| ||||| |||| ||| || | || | |||||||| || ||||| || || || Sbjct 2484 TACCACCACGAAGTCGCAACACCAGGTGAAGGGTAGATTCCTTCTGAATATTATAGTCAG 2543 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 || |||||| ||| || || ||||| || ||| |||| |||||||| || || || | Sbjct 2544 ACAACGTACGACCATCCTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTG 2603 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 |||| |||||||| || |||||| || | | ||| | |||||| | || |||| Sbjct 2604 GAATACCTTCTTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTGTCAGAGGGCTCGA 2663 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | || | || || || || || ||||| || ||||||||||| Sbjct 2664 CCTCGAGAGTTATGGTCTTCCCAGTGAGCGTTTTGACGAAAATCTGCAT 2712 >seq50967 Length=297 Score = 114 bits (126), Expect = 1e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || | ||| || ||||| | || |||||||| || ||||||||||| Sbjct 77 ATGCCTCCTCGCAGACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCC 136 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| |||||| || || || || ||| |||| ||||||||||| || || Sbjct 137 GACAAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGC 196 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || |||||||| || ||||||| || | | || | || |||| | || Sbjct 197 GGGATTCCTTCTTTATCCTGAATCTTTGCCTTGACGTTCTCGATCGTATCGGATGGCTCC 256 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 114373 || || | || | ||||||||||||||||||||| || || Sbjct 257 ACCTCGAGAGTGATCGTTTTGCCGGTCAGAGTTTTGACGAA 297 >seq42053 Length=1259 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || || || || ||||||||||| ||| Sbjct 1238 ATACCACCACGCAGACGAAGGACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAGTCG 1179 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || || ||||| || || |||||| |||| | |||||| || || || Sbjct 1178 GACAGGGTGCGTCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGG 1119 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| ||| | | || | || || | | ||| Sbjct 1118 GGAATGCCTTCCTTGTCCTGGATCTTAGCTTTCACATTCTCGATAGTATCCGAAGGCTCG 1059 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| |||||||| || || || |||||||| Sbjct 1058 ACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1009 >seq3519 Length=1813 Score = 86.0 bits (94), Expect = 5e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| || ||||| | || |||||||| || ||||||||||| || || ||| ||| Sbjct 1633 CAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGACAAGGTGCGACCATC 1692 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| || || || || ||| |||| ||||||||||| || || || || ||||| || || Sbjct 1693 TTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGGGATTCCTTCCTTATC 1752 Query 114290 GGCAATCTTT 114299 ||||||| Sbjct 1753 CTGAATCTTT 1762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419873014433376