Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq50967 138 3e-27 seq42053 134 3e-26 seq20012 134 3e-26 seq41025 123 6e-23 seq20890 118 2e-21 seq3519 104 6e-17 >seq50967 Length=297 Score = 138 bits (152), Expect = 3e-27 Identities = 143/186 (77%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || || || | | ||||| || ||||| | || ||||| ||||| Sbjct 115 TTCTTTCTGGATGTTGTAATCCGACAAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAA 174 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| ||||||||||| |||| |||||||||||||||||||| || || || || || Sbjct 175 GATAAGACGCTGTTG---ATCTGGCGGGATTCCTTCTTTATCCTGAATCTTTGCCTTGAC 231 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || | |||| | || || ||||| |||||||| || ||||||||||| || Sbjct 232 GTTCTCGATCGTATCGGATGGCTCCACCTCGAGAGTGATCGTTTTGCCGGTCAGAGTTTT 291 Query 288459 GACGAA 288464 |||||| Sbjct 292 GACGAA 297 >seq42053 Length=1259 Score = 134 bits (148), Expect = 3e-26 Identities = 147/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| || ||||||||||| || | || || || |||||| Sbjct 1199 TCCTTCTGAATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCAAGCTGCTTGCCAGCGAAG 1140 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| ||| |||||| || ||||| || |||||||| || |||||||| Sbjct 1139 ATCAAACGCTGCTGA---TCTGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCTTTCACA 1083 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || |||| ||| | || || || || ||||| ||||| || ||||||||||| Sbjct 1082 TTCTCGATAGTATCCGAAGGCTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTC 1023 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 1022 ACGAAGATCTGCAT 1009 >seq20012 Length=3655 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| | || || |||| || ||| || || ||||||||||| | Sbjct 2486 CCACCACGAAGTCGCAACACCAGGTGAAGGGTAGATTCCTTCTGAATATTATAGTCAGAC 2545 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||| || || || || | ||||| || ||||||||||||||||| ||| ||| Sbjct 2546 AACGTACGACCATCCTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGA 2605 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||||||||||||||| || || ||||| ||||| || | || | || || Sbjct 2606 ATACCTTCTTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTGTCAGAGGGCTCGACC 2665 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || |||||||| || || || |||||||| |||||||| Sbjct 2666 TCGAGAGTTATGGTCTTCCCAGTGAGCGTTTTGACGAAAATCTGCAT 2712 >seq41025 Length=2165 Score = 123 bits (136), Expect = 6e-23 Identities = 116/147 (79%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 288339 GAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| |||||||||||| |||||||||||| |||||||| || || || || || Sbjct 1 GAAGATAAGACGCTGTTGATCTGGTGGGATTCCTTCCTTATCCTGAATCTTTGCCTTGAC 60 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || | |||| | ||| || ||||| ||||||||||| ||||||||||| || Sbjct 61 GTTCTCGATCGTATCGGATGGTTCCACCTCGAGAGTGATCGTCTTTCCGGTCAGAGTTTT 120 Query 288459 GACGAATATCTGCATTATGTTATTCTA 288485 |||||| || ||||| || |||||| Sbjct 121 GACGAAGATTTGCATGTTG--ATTCTA 145 >seq20890 Length=2679 Score = 118 bits (130), Expect = 2e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || ||||||| || || || || || || || || | Sbjct 1410 CCACCACGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGAC 1469 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 |||||||||||||| || | || || || ||||| ||||||||||| || |||| Sbjct 1470 AGCGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTG---ATCTGGG 1526 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || |||||||| || |||||||| || || || | ||| | ||| Sbjct 1527 GGGATACCCTCCTTGTCCTGGATCTTGGCTTTCACATTCTCGATCGTATCCGAGGGTTCA 1586 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| || || || || || ||||| |||||||| Sbjct 1587 ACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCACGAAGATCTGCAT 1636 >seq3519 Length=1813 Score = 104 bits (114), Expect = 6e-17 Identities = 121/162 (75%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || || || | | ||||| || ||||| | || ||||| ||||| Sbjct 1654 TTCTTTCTGGATGTTGTAATCCGACAAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAA 1713 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| ||||||||||| |||| ||||||||||| |||||||| || || || || || Sbjct 1714 GATAAGACGCTGTTG---ATCTGGCGGGATTCCTTCCTTATCCTGAATCTTTGCCTTGAC 1770 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440 ||| || || | |||| | || || ||||| |||||||| Sbjct 1771 GTTCTCGATCGTATCGGATGGCTCCACCTCGAGAGTGATCGT 1812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178882844090544