Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq609 149 7e-31 seq3179 111 2e-19 seq1636 104 3e-17 seq38620 91.5 2e-13 >seq609 Length=4955 Score = 149 bits (164), Expect = 7e-31 Identities = 276/396 (70%), Gaps = 8/396 (2%) Strand=Plus/Plus Query 8541 TCGGAGATGTTTGGTAAAGTTAGGGAATCCCCTCAAAATGAGGAGACACCCTTCTATCCA 8600 || ||| ||| ||||| || ||| | || ||||| || ||||||| |||||||| Sbjct 1829 TCCGAGCTGTACGGTAAGGTGGCTGAAACGCCACAAAACGAAAAGACACCGTTCTATCCG 1888 Query 8601 CGATCCGTCTATGGCGTCTCAAAGGT-TGCGGCACATTGGCTCGTGAAGAATTACCGAGA 8659 || || |||| | | ||| | | ||| | | ||| |||||| || ||||| || Sbjct 1889 CGTTCGCCATATGCTTGCGCGAAGATGTACGG-ATACTGGATCGTGATAAACTACCGCGA 1947 Query 8660 ATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTCACCCCGTCGTGG 8719 |||| | | | || || ||| ||| ||||| ||||||||||||||||| || || || Sbjct 1948 GGCCTACGATATGTTCGCCTGCAACGGGATTCTATTCAACCACGAGTCACCGCGCCGGGG 2007 Query 8720 CCCGGATTTCGTGACAAAGAAGATCAC-CGAT-GGTATCAAACAAATCGTCGCG-GGTGA 8776 | |||| |||||| |||||||| || | ||| | || |||| || | || | Sbjct 2008 AGAGAATTTTGTGACACGAAAGATCACTCGTTCGGTGGCGAA--AATC-TCACTCGGCCA 2064 Query 8777 GAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGGA 8836 | ||| | | ||||||| || || ||| || | || | |||||||| |||||||| || Sbjct 2065 GCTGGAATGCCTTGAATTAGGTAATCTCGACTCAAAGCGAGACTGGGGCCACGCCAAAGA 2124 Query 8837 CTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCGC 8896 ||| || |||||||||||||| | | || || || || |||| || | || |||| Sbjct 2125 CTACGTGGAAGCCATGTGGCTGATGATGCAGCAGGAGAAGCCGGAGGATTTCGTTATCGC 2184 Query 8897 GACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGA 8932 || || |||||||| || || | || ||||| || Sbjct 2185 CACCGGAGAGACACATTCGGTGCGCGAATTCGTCGA 2220 >seq3179 Length=6791 Score = 111 bits (122), Expect = 2e-19 Identities = 189/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 171881 GTGAAGATGTACCTCGTTTGAGACGC-ATCTTTGCCACCCATGAGACGCGTCCCAAATTG 171939 |||||||||||||||| || ||| ||||| || ||| | ||||| || ||||| || Sbjct 3690 GTGAAGATGTACCTCGGGCTAG-CGCTGTCTTTTCCTCCCGTAAGACGTGTACCAAACTG 3748 Query 171940 ACCACACGGTTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGAC 171999 ||||| ||| | ||| ||||| || ||||| || | |||| | ||||| |||| Sbjct 3749 ACCACCCGGATAAAGCAGATTAATGTTGTTGCTTCCGACATAGTTCTGTGCCAAATTGAT 3808 Query 172000 AATCGTATCCGCG---AGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCGACATA 172056 ||||| || | ||||| | |||||||| || ||||| ||| | |||||||| | Sbjct 3809 GATCGT---CGAGCACAGGGACATCTCACCGTGGTGATAGGCGGACATCTCCGCGACTGA 3865 Query 172057 CGCCGCCAACTGTGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACAT 172116 | | || ||| |||||||||| ||| |||| ||| | |||||||| | ||| Sbjct 3866 ACCGGACAGCTGAGCCACCTTCACCTCGCGCTTGTCGTTACGCTTGAAGCACGTAAACAA 3925 Query 172117 GACCTTTCTCTGTGAAGGCTTGAGGCCGTC 172146 || || | ||| ||||| | |||||| Sbjct 3926 TACTTTCCGCTGACCGGGCTTCAAGCCGTC 3955 >seq1636 Length=7642 Score = 104 bits (114), Expect = 3e-17 Identities = 470/735 (64%), Gaps = 15/735 (2%) Strand=Plus/Minus Query 113885 TCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAG 113944 |||| || |||||| | ||| || || ||| || |||| ||| ||| || ||| Sbjct 5665 TCCTTCAGGAGATGGTGATTCACCACTTGAAATTCTCCCGACAGGACGCGCCTATTATAA 5606 Query 113945 ATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCT 114004 | || | ||||| || || ||| |||||||||| ||||| ||||| ||||| || || Sbjct 5605 ACGTTCGATGTGTACGGTTCGAAGGACTCATTGTTGCCCAAAATTTGTGCGGTTGAAGCC 5546 Query 114005 GTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTG 114064 || ||||| ||||||| || || || || | || | | ||| || || Sbjct 5545 GTCGGCATCGGTGCCAACAGTAGAGAATTGCGAATGCCATGCTTGGCAATCTTCTCTTTC 5486 Query 114065 AGGGCGTCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGA 114122 | | |||||| | || | | | || || | ||||||||| |||| | || Sbjct 5485 AATTCCGCCCAGTTCCACAGGTCCG-TAGGTGTCTTGTT-CCACATATCGTACTGCAAGA 5428 Query 114123 TACC-TTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAAT 114181 |||| ||| | ||| | || || | ||||||||||| || ||| | ||||| Sbjct 5427 TACCCTTGCTTACCGGGCTA-CCTTCGTACGTCTCGTATGGTCCGTCACGGGCAGCCAAC 5369 Query 114182 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 114241 ||| |||| ||||| | ||| ||| || ||||| ||||| || | ||| | | Sbjct 5368 TCGCAGCTAGCCTCCAAGGCACCGTAGTAGATTGTTTCAAACATTTGCTGATTGAGTTTT 5309 Query 114242 TTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGG 114301 | |||||| || || | | | ||| || ||||| |||| || | |||||| Sbjct 5308 TGGGCCTCCTCACTCTCGTATGGGTATCGCATCAGGATAAACGCATCGGCCATACCTTGC 5249 Query 114302 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGA 114358 ||||| | || || || | || | ||| || || || || |||| || ||| Sbjct 5248 ACACCAATACCGATGGGCCTGTGGCGCATGTTCGAACGACGCGC---CTCCGGAACCGGA 5192 Query 114359 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 114418 || | || | ||||| | | || | ||| || || ||| | || || | Sbjct 5191 TAGTAGTTGATGTCGATGATTTTGTTCAAGTTTCGCGTTACGGTCTTAGCGACATCTTTC 5132 Query 114419 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 114478 || || | |||| | | ||| || || | ||| || | | ||||| || Sbjct 5131 AGTTTGCCAAAATCGTACGTACGA-TCCGATC--TCACAAACATGTTTAACGCGATCGAT 5075 Query 114479 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 114538 || ||||| ||||| | |||| ||||| || |||||| | || ||||| || | Sbjct 5074 GCAAGATTGCACACGGCAATCTCGTCCTTTGAAGAGTACTCCACGATCTCCGTGCAAAGG 5015 Query 114539 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 114598 ||||| | ||| || ||||||| ||| | || || |||| |||||||||||||||| Sbjct 5014 TTTGAGCACTTTATTGTGCCCACGTTTTGCTGGTTGCTCTTTCGGTTACACGCATCCTTG 4955 Query 114599 TAAAGCATGTATGGC 114613 || |||||||| ||| Sbjct 4954 TACAGCATGTACGGC 4940 >seq38620 Length=1898 Score = 91.5 bits (100), Expect = 2e-13 Identities = 166/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| || || ||||| || ||||| || || |||||||| ||||| Sbjct 40 GGCAAAGTCGCAGTGCAGTCCTTCGTCGCGCGAGATCAGCTCGTTCGAGAACGTGAGTCC 99 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 |||||| | || |||||||| | ||||||||| || ||| ||| ||| ||||| Sbjct 100 TGGCATCAAGCCGCGCTTCTTAAGCCAGAAAATGGCCGCAAAACTACCGCTGAAAAAGAT 159 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAA 126225 |||||||| ||||| |||| | || ||| ||||| | | ||| | | Sbjct 160 ACCCTCCACGGCAGCGAAGGCAACAACCCGTTCACCAAAGTTGGCCTTCTTGCTTGAGAT 219 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 126285 ||| |||| ||||| | ||||| || | | ||||| | |||| |||||| | ||| Sbjct 220 CCAGTTCAGAGCCCAATCGGCCTTCTTTTTCACGCACGGTAGCGTCTCGATCGCGTTAAA 279 Query 126286 GAG 126288 || Sbjct 280 CAG 282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596972428667840