Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq47782 96.9 4e-15 seq40584 91.5 2e-13 seq17875 91.5 2e-13 seq7860 89.7 6e-13 seq50967 86.0 7e-12 seq36132 86.0 7e-12 >seq47782 Length=2481 Score = 96.9 bits (106), Expect = 4e-15 Identities = 90/113 (80%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 57000 AAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059 |||| |||||| || | | |||||||||| ||||||||||||||||||||| ||||| Sbjct 374 AAATCTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTG 315 Query 57060 ACCACTATACTACCGAGGATTGAATATATAACTTGAATATT---GCAATTTAG 57109 |||||||||||| |||||| || || ||| ||||| || ||||| ||| Sbjct 314 ACCACTATACTATCGAGGA---CATGTAAAACCTGAATGTTACAGCAATATAG 265 >seq40584 Length=798 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/109 (81%), Gaps = 8/109 (7%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | |||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 62 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 121 Query 57064 CTATACTACCGAGGA-TTGA-ATAT---ATAACTTGAATATTGCAATTT 57107 |||||||| |||||| |||| |||| |||| |||| |||||||| Sbjct 122 CTATACTATCGAGGACTTGAGATATTGCATAA---TAATAATGCAATTT 167 >seq17875 Length=5618 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||| ||||| ||| || | | |||||||||| ||||||||||||||||||||| ||| Sbjct 1467 AAAACTTTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1408 Query 57057 CTCACCACTATACTACCGAGGA 57078 || |||||||||||| |||||| Sbjct 1407 CTGACCACTATACTATCGAGGA 1386 >seq7860 Length=3702 Score = 89.7 bits (98), Expect = 6e-13 Identities = 77/95 (81%), Gaps = 4/95 (4%) Strand=Plus/Plus Query 56997 GAAAAATTTT----CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 57052 ||| |||||| |||| || | | |||||||||| ||||||||||||||||||||| Sbjct 2627 GAACAATTTTAGTACTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGG 2686 Query 57053 CATACTCACCACTATACTACCGAGGATTGAATATA 57087 ||||| |||||||||||| |||||| | | |||| Sbjct 2687 GATACTGACCACTATACTATCGAGGACTTAGTATA 2721 >seq50967 Length=297 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||||| | ||||||||||||||||| || || || || || |||||||| | | Sbjct 80 CCTCCTCGCAGACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGAC 139 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || | || || |||||||| || ||||| || || ||||| || || | || Sbjct 140 AAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGGG 199 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | || || ||| ||| | |||| |||| || | | ||| ||| | ||||| Sbjct 200 ATTCCTTCTTTATCC-TGAATCTTTGCCTTGACGTTCTCGATCGTATCGGATGGCTCCAC 258 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAA 42199 |||| ||||| |||||||| || || || || || || Sbjct 259 CTCGAGAGTGATCGTTTTGCCGGTCAGAGTTTTGACGAA 297 >seq36132 Length=822 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 704 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 645 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 644 TACTATCGAGGA 633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542866175912320