Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1636 138 1e-27 seq20890 122 9e-23 seq50967 120 3e-22 seq42053 114 1e-20 seq3519 95.1 1e-14 >seq1636 Length=7642 Score = 138 bits (152), Expect = 1e-27 Identities = 862/1375 (63%), Gaps = 34/1375 (2%) Strand=Plus/Minus Query 154071 GTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATA 154130 ||| |||| ||||| || || |||||||| || ||||| || || | || || ||||| Sbjct 5596 GTGTACGGTTCGAAGGACTCATTGTTGCCCAAAATTTGTGCGGTTGAAGCCGTCGGCATC 5537 Query 154131 TACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCC 154190 |||| || | ||| || || | || || || ||||| | ||| || || ||| Sbjct 5536 GGTGCCAACAGTAGAGAATTGCGAATGCCATGCTTGGCAATCTTCTCTTTCAATTCCGCC 5477 Query 154191 CAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTC 154250 || ||||||| || |||||| | ||||||||| ||||| ||||| | |||| || Sbjct 5476 CAGTTCCACAGGTCCGTAGGTGTCTTGTTCCACATATCGTACTGCAAGATACCCTTGCTT 5417 Query 154251 GCCGGACTGTCACTATAACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCT 154310 |||| || | || | ||| || |||| | ||||| ||||| || || Sbjct 5416 ACCGGGCTACCTTCGTACGTCTCGTATGGTCCGTCACGGGCAGCCAACTCGCAGCTAGCC 5357 Query 154311 TCTAACGCCGCATAGTATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCA 154370 || || || | ||||| | ||||| ||||| | || | ||| ||| | ||| Sbjct 5356 TCCAAGGCACCGTAGTAGATTGTTTCAAACATTTGCTGATTGAGTTTTTGGGCCTCCTCA 5297 Query 154371 CTTTCGTACGGCAATCCCAATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCA 154430 || ||||| || ||| || | ||| |||||||| | ||||| | || | || Sbjct 5296 CTCTCGTATGGGTATCGCATCAGGATAAACGCATCGGCCATACCTTGCACACCAATACCG 5237 Query 154431 ACGGGTCTGTGTTTTAAATTCGATTCTTTGGCAGCCTCCAGA---GGATAATAATTGATA 154487 | ||| ||||| | ||||| || |||||| || ||||| || ||||| Sbjct 5236 ATGGGCCTGTGGCGCATGTTCGAACGAC--GC-GCCTCCGGAACCGGATAGTAGTTGATG 5180 Query 154488 TCGATAATTTTATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGACAAAA 154547 ||||| ||||| || | | | ||||| Sbjct 5179 TCGATGATTTTGTTCAAGTTTCGCGTTACGGTCTTAGCGACATCTTTCAGTTTGCCAAAA 5120 Query 154548 TCAAAC--AC--TCCGCTTTTAATAAAACGATTTACACACACAGACGCCAAGTTGCAAAC 154603 || || || |||| | | | || | | || || | | || || | ||||| || Sbjct 5119 TCGTACGTACGATCCGATCTCACAAACATGTTTAACGCGATC-GATGCAAGATTGCACAC 5061 Query 154604 GGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCACAAATTACTGCATCGAAT 154663 |||||| || || | ||| | ||| || || | ||| | || ||| || Sbjct 5060 GGCAATCTCGTCCTTTGAAGAGTACTCCACGATCTCCGTGCAAAGGTTTGAGCACTTTAT 5001 Query 154664 GGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGG 154723 ||||||| ||||| ||| || || ||| || || || ||||||| |||||||| Sbjct 5000 TGTGCCCACGTTTTGCTGGTTGCTCTTTCGGTTACACGCATCCTTGTACAGCATGTACGG 4941 Query 154724 GGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGACTTC--GCGCCTCAACT 154781 ||| |||||||| || | |||||| || | | || || | || |||||| ||| Sbjct 4940 CACGCCGGTTTCCACCTGTGATTCAATTATGG--CAAACCACAGGTCCTGCGCCTTTACT 4883 Query 154782 TGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTG 154841 || | | |||| ||| ||| |||| || |||||| |||| || |||||| | Sbjct 4882 TGGCGAATAAAGCGACCTTCCTTCTCGTAGCCCTCGTACCGTTTCTCGAACTCTTCGCCC 4823 Query 154842 TACACGTCCGACAAACCGGGACAGCGGTCGGGACACATCAATGACCACATTTCGTTTTGT 154901 || || ||||| ||||| || | || ||||| | |||||||||||| Sbjct 4822 CACGAATCAGACAATCCGGGGCAATCATGCGGGCACATAAGACTCCACATTTCGTTAGCC 4763 Query 154902 TGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTT 154961 | || || ||||| || |||||||| | ||| | || || |||| || ||||| | Sbjct 4762 TCCACTCGCTTCATGAATAAATCCGGTATCCAAAGGGCATAGAACATGTCTCGCGCACGT 4703 Query 154962 TTGTCTTCAGCGCCCATGT-TTCGCTTT-AAATTCAAAAAATCATATATGTCGGCGTGCC 155019 || || | || ||| ||| ||| | || | ||| || | | || |||||| Sbjct 4702 ACCTCCTC--CTTCCCTGTGTTCTTTTTCAGATCGAGAAACTCGAACACATCACCGTGCC 4645 Query 155020 ACGGCTCTAAATATACGGCCATCGCGCC--TTTGCGT-TTTCCTCCTTGATCCACGTGAC 155076 ||||||| | || | || | || || | || | || ||||||||||| |||| | Sbjct 4644 ACGGCTCCAGGTAGATTGCAAATGCTCCGGGTCGCTTATTGCCTCCTTGATCGACGTACC 4585 Query 155077 GCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGC 155136 || | |||||||||||||| | || || ||| || ||| | || || |||| Sbjct 4584 GCGCCGTGTTATTGTACACGCGAAGCATCGGCACCAAACCATTGGAGATTCCATTTGTGC 4525 Query 155137 C----ACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAACGCCCAA-ACCTCC 155191 | | ||| || | || ||||| ||| || || | |||||| || || Sbjct 4524 CCGCGATGTA-CG---TTCCCTTCGCACGGATACAATGCACGTTCA-GCCCAATGCCACC 4470 Query 155192 GCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTC 155251 | | | || ||||| | || || | || || ||||| || || | |||||||| Sbjct 4469 GGCTGACTTTGATATCAGGGCGCACTGTTTCAGCGTATCGTAGATACCGTCAATGCTGTC 4410 Query 155252 TTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTTG-AGGGCAGCCGGCCGCAA 155310 || || |||||||| ||| || ||||| | || || | | | ||| || |||| Sbjct 4409 GTCGGACATCGTCAACAGGAAGCAGGAAGAAAGCTGCGGACGTTGTGTCGCC-GCAGCAA 4351 Query 155311 ATAATGTAGGACTAGCGTGTGTAAACATTTTGTTGGCGGTTAAGTTGTAAGTTTCGATGG 155370 | | || ||| ||| || || || | | | | | ||||| || ||||||| Sbjct 4350 ACATAGTTGGAGAAGCATGGGTGAAAAATCGCTCCGACAGCAGATTGTACGTCTCGATGG 4291 Query 155371 CGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCATCAGCATGTGTTG 155425 | || || || || ||||| |||||||| || |||||||||||||| || || Sbjct 4290 CCGCATCGATATCCTCGCCGTGAATACCGATGGCAACGCGCATCAGCATATGCTG 4236 >seq20890 Length=2679 Score = 122 bits (134), Expect = 9e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | |||||| ||||||| ||||| || || |||||||||||||| | Sbjct 1410 CCACCACGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGAC 1469 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || |||||||||||||| |||| || |||||||| || || || Sbjct 1470 AGCGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGG 1529 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || | | || ||||| ||| ||| | ||||| || || || Sbjct 1530 ATACCCTCCTTGTCCTGGA-TCTTGGCTTTCACATTCTCGATCGTATCCGAGGGTTCAAC 1588 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| || || | ||||| ||||| || ||||| || Sbjct 1589 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCACGAAGATCTGCATCTT 1639 >seq50967 Length=297 Score = 120 bits (132), Expect = 3e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| | ||| | ||||||||||| || ||||||||||| | | |||||| | ||||| Sbjct 97 CACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGACAAGGTGCGACCATCTTC 156 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 |||||||| ||||| | || || ||||| || || || || ||||||||||| || || Sbjct 157 CAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGGGATTCCTTCTTTATCCTG 216 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || ||| ||| || ||| | ||||| | ||||| || | ||| | || || Sbjct 217 AATCTTTGCCTTGACGTTCTCGATCGTATCGGATGGCTCCACCTCGAGAGTGATCGTTTT 276 Query 64414 GCCGGTCAAAGTTTTTACGAA 64434 |||||||| |||||| ||||| Sbjct 277 GCCGGTCAGAGTTTTGACGAA 297 >seq42053 Length=1259 Score = 114 bits (126), Expect = 1e-20 Identities = 171/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||| || | || | ||||| || || ||||||||||| || | Sbjct 1236 ACCACCACGCAGACGAAGGACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAGTCGGA 1177 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| |||| |||||||||||||| || | || | |||||||| || || || Sbjct 1176 CAGGGTGCGTCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGG 1117 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||| ||||| || || || | | || ||||| ||| ||| | ||||| | || | Sbjct 1116 AATGCCTTCCTTGTCCTGGA-TCTTAGCTTTCACATTCTCGATAGTATCCGAAGGCTCGA 1058 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAATAATGA 64454 | || | ||| | ||||||||| |||| ||| || ||||| || ||||| || ||||| Sbjct 1057 CCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATACTATAAATGA 998 >seq3519 Length=1813 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||| | | ||| | ||| | ||||||||||| || ||||||||||| | Sbjct 1619 CCTCCTCGCAAACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGAC 1678 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | ||||| |||||||| ||||| | || || ||||| || || || || Sbjct 1679 AAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGGG 1738 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTAC 64368 |||||||| || || || || ||| ||| || Sbjct 1739 ATTCCTTCCTTATCCTGAATCTTTGCCTTGAC 1770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499325976653120