Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1636 262 4e-65 seq50967 123 2e-23 seq20012 114 1e-20 >seq1636 Length=7642 Score = 262 bits (290), Expect = 4e-65 Identities = 1164/1818 (64%), Gaps = 44/1818 (2%) Strand=Plus/Plus Query 122886 AAAATCGAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGC 122945 ||||| ||| ||| ||| ||||||| || |||||||| |||||||| || || || Sbjct 4206 AAAATTAAGGGCAAGATCGTCGAACGTCCCCAGCATATGCTGATGCGCGTTGCCATCGGT 4265 Query 122946 GTGCACGGACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTT 123005 | ||||| || ||||| || | ||| || ||| || || |||| | |||| Sbjct 4266 ATTCACGGCGAGGATATCGATGCGGCCATCGAGACGTACAATCTGCTGTCGGAGCGATTT 4325 Query 123006 TTCACGCACGCGAGTCCCACTTTGTTCGCCGC--CGGCACGAAGTTGCCTCAGTTGTCTT 123063 ||||| || || ||| ||| |||| || || || ||| | || || ||| | |||| Sbjct 4326 TTCACCCATGCTTCTCCAACTATGTTTGCTGCGGCGACACAACGT--CCGCAGCTTTCTT 4383 Query 123064 CGTGTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCG 123123 | || || || | || || ||| |||||||| ||||||||| || || || Sbjct 4384 CCTGCTTCCTGTTGACGATGTCCGACGACAGCATTGACGGTATCTACGATACGCTGAAAC 4443 Query 123124 ATTGCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAG 123183 | ||||| |||| || || | | ||| ||||| || |||||||||| ||| | Sbjct 4444 AGTGCGCCCTGATATCAAAGTCAGCCGGTGGCATTGGGCTGAACGTGCATT--GTATCCG 4501 Query 123184 GCCGC--GGAAGCCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCT 123241 || |||| |||| |||| | |||||| || || | | | ||||| Sbjct 4502 TGCGAAGGGAACGTACATCGCGGGCACAAATGGAATCTCCAATGGTTTGGTGCCGATGCT 4561 Query 123242 GCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGCAA-ACGCAAA--GGCGC 123298 || || ||||||||| | | |||| ||||||| || || ||||| | || | || || Sbjct 4562 TCGCGTGTACAATAACACGGCGCGGTACGTCGATCAAGGAGGCAATAAGCGACCCGGAGC 4621 Query 123299 GATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACG 123358 | || ||||| || || |||||||||| |||||||| ||| ||| | || | ||| Sbjct 4622 ATTTGCAATCTACCTGGAGCCGTGGCACGGTGATGTGTTCGAGTTTCTCGATCTGAAAAA 4681 Query 123359 CAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGA 123418 |||| ||| ||| || || || || |||| || || | ||| |||| || Sbjct 4682 GAACACAGGGAAGGAGGAGGTACGTGCGCGAGACATGTTCTATGCCCTTTGGATACCGGA 4741 Query 123419 TTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTG 123478 ||| || ||| || || | | ||| ||||| || ||||| || || || Sbjct 4742 TTTATTCATGAAGCGAGTGGAGGCTAACGAAATGTGGAGTCTTATGTGCCCGCATGATTG 4801 Query 123479 TCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCG 123538 ||||| ||| || | ||| | |||| || | ||||| | |||||| Sbjct 4802 CCCCGGATTGTCTGATTCGTGGGGCGAAGAGTTCGAGAAACGGTACGAGGGCTACGAGAA 4861 Query 123539 CGAAGGCAAACAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTT---ATTATCGA 123595 ||||| || | || || ||| | || ||| ||| || || || Sbjct 4862 GGAAGGTCGCTTTATTCGCCAAGTAAAGGCGCAGGACCTGTGG---TTTGCCATAATTGA 4918 Query 123596 AACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAAC 123655 | |||| || |||||||| |||||||||||| ||||| || || || ||| | || | Sbjct 4919 ATCACAGGTGGAAACCGGCGTGCCGTACATGCTGTACAAGGATGCGTGTAACCGAAAGAG 4978 Query 123656 CAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA 123715 ||| ||| ||| |||| |||||||| || || |||||| | || || | || || Sbjct 4979 CAACCAGCAAAACGTGGGCACAATAAAGTGCTCAAACCTTTGCACGGAGATCGTGGAGTA 5038 Query 123716 CAG--CGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGT-TG 123772 | | | | || | | |||||||| ||| | || ||||| |||| || | | | Sbjct 5039 CTCTTCAAAG--GACGAGATTGCCGTGTGCAATCTTGCATCGATC-GCGTTAAACATGTT 5095 Query 123773 CGTCGAAAACGGCGCTTT--TA--ATTTC--CAAACGCTCAAACGCATAACAAAAACTGT 123826 || || | ||| | | || |||| ||||| | ||| | | || || || Sbjct 5096 TGT-GAGATCGGATCGTACGTACGATTTTGGCAAAC--TGAAAGATGTCGCTAAGACCGT 5152 Query 123827 AGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTT 123886 | || ||||||||||| ||||| | || | ||||| | ||| |||||| Sbjct 5153 AACGCGAAACTTGAACAAAATCATCGACATCAACTACTATCCGGTTCCGGAGGCGCGTCG 5212 Query 123887 GTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGT 123946 || || || ||||| || |||| | || | ||||| ||||||| |||||| | Sbjct 5213 TTCGAACATGCGCCACAGGCCCATCGGTATTGGTGTGCAAGGTATGGCCGATGCGTTTAT 5272 Query 123947 AATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGA 124006 || |||| || ||||| || || || || | || ||| |||||| || Sbjct 5273 CCTGATGCGATACCCATACGAGAGTGAGGAGGCCCAAAAACTCAATCAGCAAATGTTTGA 5332 Query 124007 AACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTA 124066 |||||| || ||||| || |||||||| |||||||| | || | |||| | || Sbjct 5333 AACAATCTACTACGGTGCCTTGGAGGCTAGCTGCGAGTTGGCTGCCCGTGACGGACCATA 5392 Query 124067 CGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGC 124126 ||| | |||| || ||||||| ||| ||||| ||||||||||| |||||||| Sbjct 5393 CGAGACGTACGAAGGTAGCCCGGTAAGCAAGGGTATCTTGCAGTACGATATGTGGAACAA 5452 Query 124127 TACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTT 124186 ||||| || | ||||| ||||| | || ||| | || | | ||| || | Sbjct 5453 GACACCTACGGACCTGTGGAACTGGGCGGAATTGAAAGAGAAGATTGCCAAGCATGGCAT 5512 Query 124187 GCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAA 124246 || || || || || |||| ||||||||||| | || || |||||||| || || Sbjct 5513 TCGCAATTCTCTACTGTTGGCACCGATGCCGACGGCTTCAACCGCACAAATTTTGGGCAA 5572 Query 124247 CAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGA 124306 ||| || |||||||| |||| ||| || | || | || || | | || || Sbjct 5573 CAATGAGTCCTTCGAACCGTACACATCGAACGTTTATAATAGGCGCGTCCTGTCGGGAGA 5632 Query 124307 TTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGA 124366 ||||||||| | ||||| ||| | || | |||||| || || |||| || || Sbjct 5633 ATTTCAAGTGGTGAATCACCATCTCCTGAAGGACTTGACGGAGTGTGGCTTGTGGGACGA 5692 Query 124367 AAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCG-TGCAGCGCATCGCTTCGATTC 124425 | ||| | || |||| | ||| | || | || | ||| || | |||| Sbjct 5693 TGATATGAGACACCGAATTCTGGCGCACAACGG-ATCGATCCAGAAAATTACGGAAATTC 5751 Query 124426 CGGAACA----CGTCAAGCAACTGTACAAAACCGTGTGGGAAATGAAAAATAAACGATT- 124480 | || | ||| | || | |||||||| || ||||| || | | |||| || Sbjct 5752 CCCAAGAGATTCGTGA--CA--TTTACAAAACGGTCTGGGAGAT-ATCAGTAAAAACTTC 5806 Query 124481 AATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTT 124540 || | ||||||| ||||||||| |||| | |||||| || || || ||| | Sbjct 5807 CATCAAGATGGCCGCCGACCGAGGAGCGTTTATAGATCAATCACAGTCGTTCAACATTCA 5866 Query 124541 TGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGCGG 124600 || || ||||| | || | | |||| || || | ||| |||| | || Sbjct 5867 CGTGGCTGAACCGAATTATGGCAAGCTGACATCGATCCATTTCTACGGCTGGAAGATGGG 5926 Query 124601 ACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTAC 124660 || |||||||||||||| ||||| | ||||| ||||||| | |||||||| || || Sbjct 5927 CCTTAAAACGGGCATGTACTACTTGCGTACCAAGCCGGCGGTAAACGCCATTCAGTTCAC 5986 Query 124661 CGTCGACAAATCTAAACT 124678 || |||||||| || || Sbjct 5987 GGTGGACAAATCGAAGCT 6004 >seq50967 Length=297 Score = 123 bits (136), Expect = 2e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | |||||| | |||||| || ||||| || ||||| || ||||| Sbjct 77 ATGCCTCCTCGCAGACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCC 136 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||| || ||||| ||| | || | || || || || ||| Sbjct 137 GACAAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGC 196 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||||||||| ||||| ||| |||| || | || | || ||||| | ||| Sbjct 197 GGGATTCCTTCTTTATCCTGAATCTTTGCCTTGA-CGTTCTCGATCGTATCGGATGGCTC 255 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 || |||||||| | |||||||||||| |||||||| || || Sbjct 256 CACCTCGAGAGTGATCGTTTTGCCGGTCAGAGTTTTGACGAA 297 >seq20012 Length=3655 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | |||||| || || || || |||||||| || |||||||| || Sbjct 2486 CCACCACGAAGTCGCAACACCAGGTGAAGGGTAGATTCCTTCTGAATATTATAGTCAGAC 2545 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| |||| ||||| || ||| | |||| || ||||| || || ||| Sbjct 2546 AACGTACGACCATCCTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGA 2605 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||||||||| || || ||| || | ||| | |||||| || | |||||| Sbjct 2606 ATACCTTCTTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTGTCAGAGGGCTCGACC 2665 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||||| | || || || || || ||||| || ||||| |||||| Sbjct 2666 TCGAGAGTTATGGTCTTCCCAGTGAGCGTTTTGACGAAAATCTGCATC 2713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451714776758080