Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq609 141 1e-28 seq3179 107 2e-18 seq1636 89.7 6e-13 >seq609 Length=4955 Score = 141 bits (156), Expect = 1e-28 Identities = 272/395 (69%), Gaps = 6/395 (2%) Strand=Plus/Plus Query 10456 TCGGAGATGTTTGGTAAAGTTAGGGAATCCCCACAAAATGAGGAGACGCCCTTCTATCCA 10515 || ||| ||| ||||| || ||| | |||||||| || |||| || |||||||| Sbjct 1829 TCCGAGCTGTACGGTAAGGTGGCTGAAACGCCACAAAACGAAAAGACACCGTTCTATCCG 1888 Query 10516 CGATCCGTCTATGGCGTCTCAAAGGT-TGCGGCACATTGGCTCGTGAAGAATTATCGCGA 10574 || || |||| | | ||| | | ||| | | ||| |||||| || || ||||| Sbjct 1889 CGTTCGCCATATGCTTGCGCGAAGATGTACGG-ATACTGGATCGTGATAAACTACCGCGA 1947 Query 10575 ATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAACCACGAGTCACCCCGTCGTGG 10634 |||| | | | || | ||| ||| ||||| ||||||||||||||||| || || || Sbjct 1948 GGCCTACGATATGTTCGCCTGCAACGGGATTCTATTCAACCACGAGTCACCGCGCCGGGG 2007 Query 10635 CCCGGATTTCGTGACAAAGAAGATCAC-CGAT-GGTATCAAACAAATCGTGGCGGGTGAG 10692 | |||| |||||| |||||||| || | ||| | || |||| || || Sbjct 2008 AGAGAATTTTGTGACACGAAAGATCACTCGTTCGGTGGCGAA--AATCTCACTCGGCCAG 2065 Query 10693 AGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGGAC 10752 ||| | | ||||||| || || ||| || | || | |||||||| |||||||| ||| Sbjct 2066 CTGGAATGCCTTGAATTAGGTAATCTCGACTCAAAGCGAGACTGGGGCCACGCCAAAGAC 2125 Query 10753 TATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAGGCGGACGAATATGTCGTCGCG 10812 || || |||||||||||||| | | || || || || |||| || | || |||| Sbjct 2126 TACGTGGAAGCCATGTGGCTGATGATGCAGCAGGAGAAGCCGGAGGATTTCGTTATCGCC 2185 Query 10813 ACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGA 10847 || || |||||||| || || | || ||||| || Sbjct 2186 ACCGGAGAGACACATTCGGTGCGCGAATTCGTCGA 2220 >seq3179 Length=6791 Score = 107 bits (118), Expect = 2e-18 Identities = 188/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 175901 GTGAAGATGTACCTCGTTTGAGACGC-ATCTTTGCCACCCATGAGACGCGTCCCAAATTG 175959 |||||||||||||||| || ||| ||||| || ||| | ||||| || ||||| || Sbjct 3690 GTGAAGATGTACCTCGGGCTAG-CGCTGTCTTTTCCTCCCGTAAGACGTGTACCAAACTG 3748 Query 175960 ACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGAC 176019 ||||| || | ||| ||||| || ||||| || | ||||| | ||||| |||| Sbjct 3749 ACCACCCGGATAAAGCAGATTAATGTTGTTGCTTCCGACATAGTTCTGTGCCAAATTGAT 3808 Query 176020 AATCGTATCCGCG---AGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCCACATA 176076 ||||| || | ||||| | |||||||| || ||||| ||| | ||||| || | Sbjct 3809 GATCGT---CGAGCACAGGGACATCTCACCGTGGTGATAGGCGGACATCTCCGCGACTGA 3865 Query 176077 CGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACAT 176136 | | || ||| |||||||||| ||| |||| ||| | |||||||| | ||| Sbjct 3866 ACCGGACAGCTGAGCCACCTTCACCTCGCGCTTGTCGTTACGCTTGAAGCACGTAAACAA 3925 Query 176137 GACCTTTCTCTGTGAAGGCTTGAGGCCGTC 176166 || || | ||| ||||| | |||||| Sbjct 3926 TACTTTCCGCTGACCGGGCTTCAAGCCGTC 3955 >seq1636 Length=7642 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 116431 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 116490 ||||| || || ||||| ||||| | |||| ||||| || |||||| | || ||| Sbjct 5083 GCGATCGATGCAAGATTGCACACGGCAATCTCGTCCTTTGAAGAGTACTCCACGATCTCC 5024 Query 116491 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 116550 || || | ||||| | ||| || ||||||| ||| | || || |||| ||||||| Sbjct 5023 GTGCAAAGGTTTGAGCACTTTATTGTGCCCACGTTTTGCTGGTTGCTCTTTCGGTTACAC 4964 Query 116551 GCATCCTTGTAGAGCATATATGGC 116574 ||||||||||| ||||| || ||| Sbjct 4963 GCATCCTTGTACAGCATGTACGGC 4940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613115721055680