Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1636 167 4e-36 seq38620 163 5e-35 >seq1636 Length=7642 Score = 167 bits (184), Expect = 4e-36 Identities = 336/493 (68%), Gaps = 8/493 (2%) Strand=Plus/Minus Query 203833 CTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTA 203892 ||||| |||||||||||||||||||||||||| || || ||| || | | || ||||| Sbjct 6002 CTTCGATTTGTCCACCGTGAACTGAATGGCGTTTACCGCCGGCTTGGTACGCAAGTAGTA 5943 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 |||||| || || |||||| ||| ||| ||||| | || || || | ||| |||| Sbjct 5942 CATGCCCGTTTTAAGGCCCATCTTCCAGCCGTAGAAATGGATCGATGTCAGCTTGCCATA 5883 Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGAT 204011 || || || |||| ||||||||| | ||||| ||| || || ||| || || || | Sbjct 5882 ATTCGGTTCAGCCACGTGAATGTTGAACGACTGTGATTGATCTAT-AAACGCTCCTCGGT 5824 Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTC 204071 | |||||||| ||||| || || || |||||||| ||||| ||| | | ||| | Sbjct 5823 CGGCGGCCATCTTGATGGAAGTTTTTACTGATATCTCCCAGACCGTTTTGTAAATGTCAC 5764 Query 204072 TGGTGTGTTGAGGCACATCTTCC--CACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTC 204128 | | ||| || | |||| | | || |||||| ||||||| |||| | || Sbjct 5763 GAATCTCTTGGGG---AATTTCCGTAATTTTCTGGATCGATCCGTTGTGCGCCAGAATTC 5707 Query 204129 TCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGT 204188 ||| | || || |||||| ||| || ||| ||| || || ||| | | Sbjct 5706 GGTGTCTCATATCATCGTCCCACAAGCCACACTCCGTCAAGTCCTTCAGGAGATGGTGAT 5647 Query 204189 TGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTT 204248 | | | ||||| ||||| ||||| || | | | | | ||| ||| | |||| Sbjct 5646 TCACCACTTGAAATTCTCCCGACAGGACGCGCCTATTATAAACGTTCGATGTGTACGGTT 5587 Query 204249 CGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGA 204308 |||| | ||| |||||||| ||||| || ||||| ||||| ||||| || |||| | Sbjct 5586 CGAAGGACTCATTGTTGCCCAAAATTTGTGCGGTTGAAGCCGTCGGCATCGGTGCCAACA 5527 Query 204309 GCAGGGAGTTGCG 204321 | || || ||||| Sbjct 5526 GTAGAGAATTGCG 5514 >seq38620 Length=1898 Score = 163 bits (180), Expect = 5e-35 Identities = 194/258 (75%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 159911 TTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTG 159970 || |||| ||| || |||||||||||||||||||| ||||| || ||||| | |||||| Sbjct 26 TTGAACATGAGACAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGCGAGATCAGCTCGTTC 85 Query 159971 GACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA 160030 || | |||| || ||||| | || ||| || ||||| ||||||||||||||| | Sbjct 86 GAGAACGTGAGTCCTGGCATCAAGCCGCGCTTCTTAAGCCAGAAAATGGCCGCAAAACTA 145 Query 160031 CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCG 160090 ||||| |||||||| ||||||||||| || || || || | || |||||||| ||| Sbjct 146 CCGCTGAAAAAGATACCCTCCACGGCAGCGAAGGCAACAACCCGTTCACCAAAGTTGGCC 205 Query 160091 TTGGTGTCATG-GGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCG 160149 || || | || | |||| | ||||| || ||||||||| | |||||| | ||| Sbjct 206 TTCTTG-CTTGAGATCCAGTTCAGAGCCCAATCGGCCTTCTTTTTCACGCACGGTA-GCG 263 Query 160150 -CTCGACGGCGTTAAACA 160166 ||||| |||||||||| Sbjct 264 TCTCGATCGCGTTAAACA 281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794647811466880