Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq38620 159 3e-34 seq50967 127 2e-24 seq20012 116 4e-21 seq42053 113 5e-20 seq3519 102 8e-17 >seq38620 Length=1898 Score = 159 bits (176), Expect = 3e-34 Identities = 196/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 132871 TGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAA 132930 ||||||| | |||||||| | || ||||||||||| |||| || ||||| | || Sbjct 14 TGCACCAGGTATTTGAACATGAGACAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGCGAG 73 Query 132931 ATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATG 132990 || || ||||| ||| || | || ||||| | |||||| || || ||||| || ||| Sbjct 74 ATCAGCTCGTTCGAGAACGTGAGTCCTGGCATCAAGCCGCGCTTCTTAAGCCAGAAAATG 133 Query 132991 GCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCG 133050 || || ||||| || || |||| ||||| ||||| ||||| || || | || || Sbjct 134 GCCGCAAAACTACCGCTGAAAAAGATACCCTCCACGGCAGCGAAGGCAACAACCCGTTCA 193 Query 133051 CCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACG 133110 || || |||| | ||||| | ||||||| ||| ||||| |||||||| | ||| ||| Sbjct 194 CCAAAGTTGGCCTTCTTGCTTGAGATCCAGTTCAGAGCCCAATCGGCCTTCTTTTTCACG 253 Query 133111 CACGGCATCGTTTCGATGGCGTTCAACA 133138 ||||| | ||| ||||| ||||| |||| Sbjct 254 CACGGTAGCGTCTCGATCGCGTTAAACA 281 >seq50967 Length=297 Score = 127 bits (140), Expect = 2e-24 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| ||||| || || |||||||| ||||| |||| || ||| | |||| | | Sbjct 297 TTCGTCAAAACTCTGACCGGCAAAACGATCACTCTCGAGGTGGAGCCATCCGATACGATC 238 Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCAACAGCGGC 38370 | |||| | || | ||| || | || ||||| ||||| |||||| || |||||||| | Sbjct 237 GAGAACG-TCAAGGCAAAGATTCAGGATAAAGAAGGAAT-CCCGCCAGATCAACAGCGTC 180 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 | || | ||| || || |||||||| || | |||||| | || ||||||||||| | Sbjct 179 TTATCTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACCTTGTCGGATTACAACATCCAGA 120 Query 38431 AGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 | ||| |||| |||||||||||| ||||| || |||| ||| Sbjct 119 AAGAATCGACTCTGCATTTGGTGTTGCGTCTGCGAGGAGGC 79 >seq20012 Length=3655 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| ||||||||||| || || ||||| || |||| |||||| | Sbjct 2716 AAAGATGCAGATTTTCGTCAAAACGCTCACTGGGAAGACCATAACTCTCGAGGTCGAGCC 2657 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | | |||| | | ||| | || | ||| |||| || ||||| || ||||| | || Sbjct 2656 CTCTGACACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAAGAAGGTATTCCACCAGA 2597 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| || || | ||| |||||||||||||| || | || || | ||||| Sbjct 2596 TCAGCAGCGTCTGATCTTCGCCGGCAAACAGCTGGAGGATGGTCGTACGTTGTCTGACTA 2537 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || || |||||| | || || || ||||| |||| Sbjct 2536 TAATATTCAGAAGGAATCTACCCTTCACCTGGTGTTGCG 2498 >seq42053 Length=1259 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| |||||||| | || |||||| | | Sbjct 1009 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCTTCG 1068 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| || |||| ||||| || || |||||| | || || Sbjct 1069 GATACTATCGAGAATGTGAAAGCTAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 1128 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| ||||| || |||| |||||||| |||||||||| Sbjct 1129 CAGCGTTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGACGCACCCTGTCCGACTACAAC 1188 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| |||| |||| ||||| || ||| || | || || Sbjct 1189 ATTCAGAAGGAGTCGACCTTGCACTTGGTCCTTCGTCTGCGTGGTGG 1235 >seq3519 Length=1813 Score = 102 bits (112), Expect = 8e-17 Identities = 144/197 (73%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 38276 AACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCC 38334 ||| ||||| |||| || ||| | |||| | | | |||| | || | ||| || | Sbjct 1813 AACGATCACTCTCGAGGTGGAGCCATCCGATACGATCGAGAACG-TCAAGGCAAAGATTC 1755 Query 38335 TCGACAAAGAGGGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTG 38393 || || || ||||| |||||| || |||||||| || || | ||| || || |||||| Sbjct 1754 AGGATAAGGAAGGAAT-CCCGCCAGATCAACAGCGTCTTATCTTCGCCGGAAAGCAGCTG 1696 Query 38394 GACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTG 38453 || || | |||||| | || ||||||||||| || ||| |||| |||||||||||| Sbjct 1695 GAAGATGGTCGCACCTTGTCGGATTACAACATCCAGAAAGAATCGACTCTGCATTTGGTG 1636 Query 38454 CTGCGTTTGAGAGGCGG 38470 |||||||| |||| || Sbjct 1635 TTGCGTTTGCGAGGAGG 1619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499853639736320