Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq50967 147 5e-30 seq3519 122 2e-22 seq42053 113 1e-19 seq41025 113 1e-19 >seq50967 Length=297 Score = 147 bits (162), Expect = 5e-30 Identities = 151/195 (77%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 || ||||| || ||||| || || |||||||| | |||| || | |||||||| ||||| Sbjct 104 TGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGACAAG-GTGCGACCATCTTCCAGCTG 162 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||||||||| || ||||| ||||| || || |||||||| || ||||| || Sbjct 163 CTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGGGATTCCTTCTTTATCCTGAATCTT 222 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | |||||||||||| || || || || ||||| || || || | ||| || || || Sbjct 223 TGCCTTGACGTTCTCGATCGTATCGGATGGCTCCACCTCGAGAGTGATCGTTTTGCCGGT 282 Query 195117 CAAAGTTTTTACGAA 195131 || |||||| ||||| Sbjct 283 CAGAGTTTTGACGAA 297 >seq3519 Length=1813 Score = 122 bits (134), Expect = 2e-22 Identities = 131/171 (77%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 || ||||| || ||||| || || |||||||| | |||| || | |||||||| ||||| Sbjct 1643 TGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGACAAG-GTGCGACCATCTTCCAGCTG 1701 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||||||||| || ||||| ||||| || || ||||| || || ||||| || Sbjct 1702 CTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGGGATTCCTTCCTTATCCTGAATCTT 1761 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 | |||||||||||| || || || || ||||| || || || | ||| Sbjct 1762 TGCCTTGACGTTCTCGATCGTATCGGATGGCTCCACCTCGAGAGTGATCGT 1812 >seq42053 Length=1259 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| || ||||| ||||| |||| || || | || || || |||||||| || Sbjct 1205 GTCGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCAAGCTGCTTGCCA 1146 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| | || || || ||||| ||||||||||| ||||| || || || || Sbjct 1145 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCTTTC 1086 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || ||||| || || |||||| || || || || || | ||||| || |||| ||| Sbjct 1085 ACATTCTCGATAGTATCCGAAGGCTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTC 1026 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | ||||| Sbjct 1025 TTCACGAAGATCTGCAT 1009 >seq41025 Length=2165 Score = 113 bits (124), Expect = 1e-19 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 195006 GAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGAC 195065 ||||||||| || ||||| ||||| || || ||||| || || ||||| ||| |||||| Sbjct 1 GAAGATAAGACGCTGTTGATCTGGTGGGATTCCTTCCTTATCCTGAATCTTTGCCTTGAC 60 Query 195066 GTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTT 195125 |||||| || || || || |||||| || || || | ||||||||| |||| |||||| Sbjct 61 GTTCTCGATCGTATCGGATGGTTCCACCTCGAGAGTGATCGTCTTTCCGGTCAGAGTTTT 120 Query 195126 TACGAACACTTGCAT 195140 ||||| | |||||| Sbjct 121 GACGAAGATTTGCAT 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108755940785816