Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq20890 105 4e-18 seq20012 93.3 3e-14 seq42053 87.8 1e-12 >seq20890 Length=2679 Score = 105 bits (116), Expect = 4e-18 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| || || || || | ||| | || |||||||| || ||||| || Sbjct 1446 TCCTTCTGAATGTTGTAATCAGACAGCGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAA 1505 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | ||||||||||| ||||| ||| || || Sbjct 1506 ATCAGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCCTGGATCTTGGCTTTCAC--AT 1563 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| || || ||||| || | ||| ||||| || |||||||| || |||| Sbjct 1564 TCTCGATCGTATCCGAGGGTTCAACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCA 1623 Query 34969 CAAAGATCTGCATATT 34984 | ||||||||||| || Sbjct 1624 CGAAGATCTGCATCTT 1639 >seq20012 Length=3655 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||| ||||| || ||| |||||||| |||||||| || | | || |||| Sbjct 2500 CAACACCAGGTGAAGGGTAGATTCCTTCTGAATATTATAGTCAGACAACGTACGACCATC 2559 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||||||||||| ||||| || || || || ||||| ||| | || | || || || || Sbjct 2560 CTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTATC 2619 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| || || | | || | ||| || ||| || |||| |||||||| Sbjct 2620 CTGGATCTTTGCCTTCACATTTTCGATGGTGTCAGAGGGCTCGACCTCGAGAGTTATGGT 2679 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || ||||| || || || || |||||||| || Sbjct 2680 CTTCCCAGTGAGCGTTTTGACGAAAATCTGCATCTT 2715 >seq42053 Length=1259 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||||||||| ||||| || ||| | ||| | || || Sbjct 1217 ACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCA 1158 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || | || ||||| ||| | || | || |||||||| Sbjct 1157 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 1098 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 ||||| ||| || || | ||||| | ||| | ||| || || | || ||||| Sbjct 1097 ATCTTAGCTTTCAC--AT--TCTCGATAGTATCCGAAGGCTCGACCTCCAGAGTGATGGT 1042 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||||||||| |||||||||||| Sbjct 1041 CTTGCCAGTCAGAGTCTTCACGAAGATCTGCATA 1008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324431630017344