Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1636 149 7e-31 seq38620 86.0 7e-12 >seq1636 Length=7642 Score = 149 bits (164), Expect = 7e-31 Identities = 410/626 (65%), Gaps = 2/626 (0%) Strand=Plus/Minus Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCA 48269 |||| |||| ||| ||||||||||| || ||| || | || | | | || || || Sbjct 4752 TCATGAATAAATCCGGTATCCAAAGGGC-ATAGAACATGTCTCGCGCACGTACCTCCTCC 4694 Query 48270 TTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAA 48329 || || | ||| |||| || || ||||| || | | |||| | ||||| || || | Sbjct 4693 TTCCCTGTGTTCTTTTTCAGATCGAGAAACTCGAACACATCACCGTGCCACGGCTCCAGG 4634 Query 48330 TATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTG 48389 || ||||| | | | || ||||| ||||| ||||||||||| | || | || || || Sbjct 4633 TAGATTGCAAATGCTCCGGGTCGCTTATTGCCTCCTTGATCGACGTACCGCGCCGTGTTA 4574 Query 48390 TTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAA 48449 || || || | | ||| || || | |||||| || || ||||| || |||| || || Sbjct 4573 TTGTACACGCGAAGCATCGGCACCAAACCATTGGAGATTCCATTTGTGCCCGCGATGTAC 4514 Query 48450 CTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATT 48509 |||| | || | ||| | | | || || ||||| || || ||||| Sbjct 4513 GTTCCCTTCGCACGGATACAATGCACGTTCAGCCCAATGCCACCGGCTGACTTTGATATC 4454 Query 48510 AGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAAT 48569 || || ||| |||| || ||||| || || || || || || || || ||| | || Sbjct 4453 AGGGCGCACTGTTTCAGCGTATCGTAGATACCGTCAATGCTGTCGTCGGACATCGTCAAC 4394 Query 48570 AGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCA 48629 || || || ||| | |||||| | || | | | ||| | |||||||| ||| Sbjct 4393 AGGAAGCAGGAAGAAAGCTGCGGACGTTGTGTCGCCGCAGCAAACATAGTTGGAGAAGCA 4334 Query 48630 TGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCAT 48689 || | || || ||| || | || || || || || || | | ||| |||||| Sbjct 4333 TGGGTGAAAAATCGCTCCGACAGCAGATTGTACGTCTCGATGGCCGCATCGATATCCTCG 4274 Query 48690 TGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTA 48749 || ||||| || | || ||||| | ||||| || || | ||| || || ||| Sbjct 4273 CCGTGAATACCGATGGCAACGCGCATCAGCATATGCTGGGGACGTTCGACGATCTTGCCC 4214 Query 48750 TTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAG 48809 || ||||| | || || ||| ||||| |||||||| || ||||| || || |||| Sbjct 4213 TTAATTTTGAGCAGGTAGGATCGCTCCAAAGTTTTAAAGCCGAAATAATTATAGCCAAAG 4154 Query 48810 TCGTTATCATTAATAATTGATGAATT 48835 ||| ||| | |||||| | ||||| Sbjct 4153 TCGCGATCGTAAATAATGGCCGAATT 4128 >seq38620 Length=1898 Score = 86.0 bits (94), Expect = 7e-12 Identities = 176/259 (68%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 18948 TTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATT 19007 ||| ||||| | ||| ||||| || || || ||||| ||||| | |||| || || Sbjct 25 TTTGAACATGAGACAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGCGAGATCAGCTCGTT 84 Query 19008 AGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGA 19067 || || || | || ||||||| || | || || | |||||| || | ||||| Sbjct 85 CGAGAACGTGAGTCCTGGCATCAAGCCGCGCTTCTTAAGCCAGAAAATGGCCGCAAAACT 144 Query 19068 TCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGC 19127 || || || ||||| || || || || || ||||| | | ||| ||| | | || Sbjct 145 ACCGCTGAAAAAGATACCCTCCACGGCAGCGAAGGCAACAACCCGTTCACCAAAGTTGGC 204 Query 19128 ATCATTATTATGA-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTG 19186 | || | ||| ||||| ||||| |||||||| ||||||||||| || || || | | Sbjct 205 CTTCTTGCT-TGAGATCCAGTTCAGAGCCCAATCGGCCTTCTTTTTCACGCACGGTAGCG 263 Query 19187 TCTCTATAGAATTAAATAG 19205 |||| || | ||||| || Sbjct 264 TCTCGATCGCGTTAAACAG 282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561750118374720