Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2949 152 4e-32 seq50967 136 3e-27 seq3519 116 3e-21 seq20012 114 1e-20 seq42053 98.7 8e-16 seq41025 86.0 5e-12 >seq2949 Length=10021 Score = 152 bits (168), Expect = 4e-32 Identities = 306/452 (68%), Gaps = 4/452 (1%) Strand=Plus/Plus Query 13651 ATTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCG 13710 ||||||||||| ||| || ||||| | ||||||| ||| || || ||| | || || Sbjct 8937 ATTGAATTTTCTTTTGCAGCCTTCGTAGTTCATGTATCGAATCTTTCCAAATATATCGCG 8996 Query 13711 CTCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTT 13770 ||| ||||| | |||| || | || || |||||||| || || | || ||||| Sbjct 8997 CTCTTTCCAGCCCTGATCATGGATACCCGCGATCGACCACATACAGCCAACGTACCCGTT 9056 Query 13771 GGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATT--AAAGCC 13828 |||||||||||||| | |||||| |||||| | ||| ||||| ||||| | ||| Sbjct 9057 TGGATCGCGTCCATCGAGACTGTACCGGTCGTTCAGATAGATGGC--TGATTCGAGCGCC 9114 Query 13829 ACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCG 13888 || ||||| | | |||||| | ||||| || ||||| || |||| || | ||| Sbjct 9115 TCTTCAGGCGTTTTGGTCCATTCGAGGATTTTCTTCGCCCAGTACATTCGCAGGAAGCCG 9174 Query 13889 TGCATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACAATATGTCATGAGTT 13948 ||||||||||||| | || | |||| |||||| | ||||||||| ||| || ||| Sbjct 9175 TGCATTTTGCCTTCCTTTACCATCTGTAGCTGAGCCGAGTTCCACAAGTCGTCGTGTGTT 9234 Query 13949 TCGGAATTTTCTAATTCTCTTCTATTGTAACAATATTCCCGGCCTTCGTTTGCATGCAGA 14008 | || |||| | || | |||| |||||| | || || || || Sbjct 9235 TTGGCCGTTTCAAGCTCGTCCCGCGTGTAGCAATATACTCGTTTATCCTTGCGGTGGTCG 9294 Query 14009 CTCAACGTTTCTTTAGCCCAATCAGGCGCGCCTTCAAACCGATCATAATTGATGTTGTAA 14068 ||||||| | | |||||| || || |||| || |||||| || |||| | Sbjct 9295 TTCAACGTCTTCTGAGCCCACTCGTAGGCTCCTTTAAGGTTATCATAGTTTTTGTTATGG 9354 Query 14069 TAGCAAAAGTTGTCTGCCAATTCTCGTCGAAC 14100 | ||||||||||| | || ||| || || || Sbjct 9355 AAACAAAAGTTGTCCGACAGTTCGCGCCGCAC 9386 >seq50967 Length=297 Score = 136 bits (150), Expect = 3e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| | ||| || || ||||| || || |||||||| || || |||||||| | Sbjct 80 CCTCCTCGCAGACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGAC 139 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||| ||||| || || || || | |||||||||||| ||||| Sbjct 140 AAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGGG 199 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||||||||| ||||| ||| || || | || | || || || | ||||| Sbjct 200 ATTCCTTCTTTATCCTGAATCTTTGCCTTGACGTTCTCGATCGTATCGGATGGCTCCACC 259 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 || ||||||| |||||||||||| | |||||| || || Sbjct 260 TCGAGAGTGATCGTTTTGCCGGTCAGAGTTTTGACGAA 297 >seq3519 Length=1813 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||||| ||||| || || ||||| || || |||||||| || || |||||||| | Sbjct 1617 TTCCTCCTCGCAAACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCG 1676 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | |||| |||| ||||| || || || || | |||||||||||| |||| Sbjct 1677 ACAAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCG 1736 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| ||||| ||||| ||| || || | || | || || || | |||| Sbjct 1737 GGATTCCTTCCTTATCCTGAATCTTTGCCTTGACGTTCTCGATCGTATCGGATGGCTCCA 1796 Query 101421 CTTCAAGAGTGACCGTT 101437 | || ||||||| |||| Sbjct 1797 CCTCGAGAGTGATCGTT 1813 >seq20012 Length=3655 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||||||||| || || ||||| || || | | || | |||| |||| || Sbjct 2510 TGAAGGGTAGATTCCTTCTGAATATTATAGTCAGACAACGTACGACCATCCTCCAGCTGT 2569 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || |||| |||||| ||||| || ||||| ||||||||||| || || ||| Sbjct 2570 TTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTATCCTGGATCTTT 2629 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| |||| | |||||||| | || || || ||||| | || || || || Sbjct 2630 GCCTTCACATTTTCGATGGTGTCAGAGGGCTCGACCTCGAGAGTTATGGTCTTCCCAGTG 2689 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || |||||||| Sbjct 2690 AGCGTTTTGACGAAAATCTGCAT 2712 >seq42053 Length=1259 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || | ||| || || || || || ||||| |||| | || | | || || Sbjct 1217 ACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCA 1158 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || ||||||||||| || || || Sbjct 1157 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 1098 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| | || | ||| || || | || || || ||||||| || ||| Sbjct 1097 ATCTTAGCTTTCACATTCTCGATAGTATCCGAAGGCTCGACCTCCAGAGTGATGGTCTTG 1038 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||| || || || |||||||| Sbjct 1037 CCAGTCAGAGTCTTCACGAAGATCTGCAT 1009 >seq41025 Length=2165 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 101336 AATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACA 101395 || || | |||||||||||| || || || ||||| ||||| ||||| ||| || || Sbjct 2 AAGATAAGACGCTGTTGATCTGGTGGGATTCCTTCCTTATCCTGAATCTTTGCCTTGACG 61 Query 101396 ATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTT 101455 | || | || || || | |||||| || ||||||| ||| || ||||| | |||||| Sbjct 62 TTCTCGATCGTATCGGATGGTTCCACCTCGAGAGTGATCGTCTTTCCGGTCAGAGTTTTG 121 Query 101456 ACAAATATCTGCATG 101470 || || || |||||| Sbjct 122 ACGAAGATTTGCATG 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396031856384136