Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq44410 154 1e-32 seq20890 113 3e-20 seq50967 93.3 3e-14 >seq44410 Length=2181 Score = 154 bits (170), Expect = 1e-32 Identities = 218/304 (72%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 8992 TAATTAGTACCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGTA 9051 ||||| || ||||| || ||||| || || |||| || | |||||||| |||| | Sbjct 540 TAATTGGTTCCGGTAGAACCAAAGCCCCCTGCTCCACGCTCCGTGTCAGTAAGAGAAGGA 599 Query 9052 ACCTCTACCAG-TGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCC 9110 | |||| ||| | |||| || | |||| ||| || || |||||||| || | || || Sbjct 600 AGCTCTTCCAAATCTGGG-TAGGATATTTTTTCGCATATGAATTGAGCGATGCGATCTCC 658 Query 9111 CTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCT 9170 || || || | || || | || ||||| ||||||||||| || || ||||| || | Sbjct 659 TTTTTTAACTTCGAAATCAGCTTCCGAATGGTTGAACAGCACAACACCAACGTTTCCGCG 718 Query 9171 GTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGA 9230 || || ||||||| ||||| ||||| || |||||||| | ||| || || || || || Sbjct 719 ATAGTCTTCATCGACGACACCGGCACCGACATCGATGAAATTCTTCACAGCAAGCCCTGA 778 Query 9231 GCGGGGCGCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGAC 9290 ||||| || | ||| ||||| || || | |||| || || | | |||||||||||| Sbjct 779 CCGGGGTGCTACTCGGCCGTAACAGCCTTCGGGTACCTGTACTTGGATGTCGGTCATGAC 838 Query 9291 CAGC 9294 ||| Sbjct 839 GAGC 842 >seq20890 Length=2679 Score = 113 bits (124), Expect = 3e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || || | ||||| ||| || || ||| || ||||| |||||||||| Sbjct 1408 CGCCACCACGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTGTAATCAG 1467 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | || | || |||| |||| |||||| ||||| || ||||| ||||| ||||| | || Sbjct 1468 ACAGCGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGG 1527 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | ||||||||||| ||||| ||| ||| | | | || || | || | Sbjct 1528 GGATACCCTCCTTGTCCTGGATCTTGGCTTTCACATTCTCGATCGTATCCGAGGGTTCAA 1587 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTG 48772 |||| | ||||| || || ||||| | ||||| || || ||||||||| |||| Sbjct 1588 CCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCACGAAGATCTGCATCTTGTG 1642 >seq50967 Length=297 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||||||| || || ||||| || || |||||||| || | | ||| Sbjct 89 AGACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGACAAGGTGCGA 148 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || || || ||||||||||| | || | || || Sbjct 149 CCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGGGATTCCTTCT 208 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||||| || || | | | || || | ||||||||| | || Sbjct 209 TTATCCTGAATCTTTGCCTTGACGTTCTCGATCGTATCGGATGGCTCCACCTCGAGAGTG 268 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAA 48757 |||||||| || |||| |||||| || || Sbjct 269 ATCGTTTTGCCGGTCAGAGTTTTGACGAA 297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380700600624504