Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1636 163 3e-35 seq609 152 6e-32 seq3179 96.9 4e-15 >seq1636 Length=7642 Score = 163 bits (180), Expect = 3e-35 Identities = 459/695 (66%), Gaps = 15/695 (2%) Strand=Plus/Plus Query 75894 AATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGA 75953 |||||||| ||| || || || || ||||| ||||||||||| |||||| |||| Sbjct 4918 AATCACAGGTGGAAACCGGCGTGCCGTACATGCTGTACAAGGATGCGTGTAACCGAAAGA 4977 Query 75954 GTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGT 76013 | ||||| | || |||| ||||| ||| ||||||| ||||||||||| || | |||| Sbjct 4978 GCAACCAGCAAAACGTGGGCACAATAAAGTGCTCAAACCTTTGCACGGAGATCGTGGAGT 5037 Query 76014 ACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATG 76073 || | ||||| |||| || || |||||| | ||||| ||||| | | || || Sbjct 5038 ACTCTTCAAAGGACGAGATTGCCGTGTGCAATCTTGCATCGATCGCGTTAAACATGTTTG 5097 Query 76074 TCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTA 76133 | | || || ||| || | |||| || ||||| | || || | |||| || | Sbjct 5098 TGA--GATCGGA-TCGTACGTACGATTTTGGCAAACTGAAAGATGTCGCTAAGACCGTAA 5154 Query 76134 CCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGT 76193 | ||| | ||| | |||| |||| || | ||||| ||| | ||||| | Sbjct 5155 CGCGAAACTTGAACAAAATCATCGACATCAACTACTATCCGGTTCCGGAGGCGCGTCGTT 5214 Query 76194 CTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTT 76253 | || ||||| ||||| || || ||| | ||||| |||||| | || |||| ||||| Sbjct 5215 CGAACATGCGCCACAGGCCCATCGGTATTGGTGTGCAAGGTATGGCCGATGCGTTTATCC 5274 Query 76254 TGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAA 76313 || || ||| ||| || || || ||| | | | ||| | || ||||||| Sbjct 5275 TGATGCGATACCCATACGAGAGTGAGGAGGCCCAAAAACTCAATCAGCAAATGTTTGAAA 5334 Query 76314 CCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCC---AAGGTTCCT 76370 | || || ||| || ||||||| || || || |||||| |||| | || | | Sbjct 5335 CAATCTACTACGGTGCCTTGGAGGCTAGCTGCGAGTTGGCT---GCCCGTGACGGACCAT 5391 Query 76371 ATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTT-CAGTTTGATATGTGGGAA 76429 | ||||| | || || | |||| |||||| ||| |||| ||||||| |||| Sbjct 5392 ACGAGACGTACGAAGG-TAGCCCGGTAAGCAAGGGTATCTTGCAGTACGATATGT-GGAA 5449 Query 76430 GGTGAAACCAAGCTCAACTACG--ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGG 76487 || ||| | | | || | |||||| | | || || || || | | Sbjct 5450 CAAGACACCTA-CGGACCTGTGGAACTGGGCGGAATTGAAAGAGAAGATTGCCAAGCATG 5508 Query 76488 GTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGG 76547 | |||| || ||| || ||||||| ||||| || || || ||||||||||| |||| Sbjct 5509 GCATTCGCAATTCTCTACTGTTGGCACCGATGCCGACGGCTTCAACCGCACAAATTTTGG 5568 Query 76548 GTAATAATGAATGCTTTGAACCATACACAACAAAC 76582 | || ||||| | ||| ||||| |||||| | ||| Sbjct 5569 GCAACAATGAGTCCTTCGAACCGTACACATCGAAC 5603 >seq609 Length=4955 Score = 152 bits (168), Expect = 6e-32 Identities = 284/417 (68%), Gaps = 10/417 (2%) Strand=Plus/Minus Query 177554 ACATTTCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAG 177613 || |||| || || | | ||| || |||||||| || || |||| ||| | || || | Sbjct 2225 ACTTTTCGACGAATTCGCGCACCGAATGTGTCTCTCCGGTGGCGATAACGAAATCCTCCG 2166 Query 177614 CCTCTTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGT 177673 || || || || | ||| |||||||||||||| || ||||| ||||| || ||||||| Sbjct 2165 GCTTCTCCTGCTGCATCATCAGCCACATGGCTTCCACGTAGTCTTTGGCGTGGCCCCAGT 2106 Query 177674 CTCTGGCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCTCACCTTTCACAATTTGTT 177733 ||| | || ||| ||||| | ||||||| | || || || | | | | | Sbjct 2105 CTCGCTTTGAGTCGAGATTACCTAATTCAAGGCATTC-----CAGCTGGCCGAGTGAGAT 2051 Query 177734 TGACGCCATC-----AGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTC 177788 | ||||| | ||| ||||| ||| ||||| | | || || | |||||| || Sbjct 2050 TTTCGCCACCGAACGAGTGATCTTTCGTGTCACAAAATTCTCTCCCCGGCGCGGTGACTC 1991 Query 177789 GTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGAC 177848 ||||||||| || || ||| |||||| ||||| | |||| || ||||| ||| | || Sbjct 1990 GTGGTTGAATAGAATCCCGTTGCAGGCGAACATATCGTAGGCCTCGCGGTAGTTTATCAC 1931 Query 177849 GAGCCAGTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTC 177908 || ||||| || || || | | |||| || || || ||||| ||||||| Sbjct 1930 GATCCAGTATCCGTACATCTTCGCGCAAGCATATGGCGAACGCGGATAGAACGGTGTCTT 1871 Query 177909 CTCAGTTTGTGGAGTTTCTCGGACTTTACCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 || ||||||| ||||| || ||||| ||| ||| || || ||||| ||||| Sbjct 1870 TTCGTTTTGTGGCGTTTCAGCCACCTTACCGTACAGCTCGGACGTCGAGGCCTGGTA 1814 >seq3179 Length=6791 Score = 96.9 bits (106), Expect = 4e-15 Identities = 268/408 (66%), Gaps = 10/408 (2%) Strand=Plus/Minus Query 14381 CAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATCTCAAGGATGAAATGAAGGTGGCA 14440 ||| ||||||| ||| | | |||||| | || |||| || |||||||||| Sbjct 3937 CAGCGGAAAGTATTGTTTACGTGCTTCAAGCGTAACGACAAGCGCGAGGTGAAGGTGGCT 3878 Query 14441 CAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCATGGTGAAGTATCCTTAGCG 14500 || ||| | | | |||||||| | ||| || || ||||| ||||| | ||| | | | Sbjct 3877 CAGCTGTCCGGTTCAGTCGCGGAGATGTCCGCCTATCACCACGGTGAGATGTCCCT-GTG 3819 Query 14501 GAC-ACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAAACAACATTAACCTTCTTGA 14559 | ||||| | || |||||| | |||| || ||||||||||| || ||| | Sbjct 3818 CTCGACGATCATCAATTTGGCACAGAACTATGTCGGAAGCAACAACATTAATCTGCTTTA 3759 Query 14560 ACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAGGATGCTTCTCAGACGAGGTA 14619 ||| ||||||| |||||||| ||||| | ||| || || || || ||||||| Sbjct 3758 TCCGGGTGGTCAGTTTGGTACACGTCTTACGGGAGGAAAAGACAGCGCTAGCCCGAGGTA 3699 Query 14620 CATTTTCACAAAACTTACCAAGGAGGCTCGCAAGATCTTTGATCCTCGGGATGACCCGAT 14679 ||| ||||| | | || | | ||| | || || | || | || || || | Sbjct 3698 CATCTTCACGATGATGTCCGCTCTGACGCGCCACATTTTCCACCCGCTCGACGATCCACT 3639 Query 14680 CCTCAACTACTTGGACGATGATGGACGCTC----CATTGAACCAGACTTTTACATGCCAA 14735 || | || | |||| |||| || ||||||||| | | ||| |||||| Sbjct 3638 GCTGGAGTATCAGAACGA----GGACAATCAGCGCATTGAACCCGTTTGGTACTTGCCAA 3583 Query 14736 CTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGTACGGGTT 14783 | |||||||| | || | |||||| | || ||||||||||| |||| Sbjct 3582 TTATACCAATGCTGCTGATAAATGGAGCGGAAGGTATCGGTACTGGTT 3535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596188928938240