Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2157 147 3e-29 seq51029 141 1e-27 seq9162 122 1e-21 seq38620 118 1e-20 seq1636 91.5 2e-12 >seq2157 Length=6562 Score = 147 bits (162), Expect = 3e-29 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| || ||| || || ||||| ||||| ||||| | || Sbjct 4343 GCTTGGCCAGCTCACCGGGCAGGAGCAGACGGACCGCGGTTTGGATTTCGCGGGACGTGA 4402 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| ||||||||| |||||||||| ||| ||||||| | ||||||| |||| | Sbjct 4403 TCGTCGAGCGCTTGTTGTAGTGCGCCAGTCGGGACGCCTCGGCGGCGATGCGCTCGAAGA 4462 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||| ||||| |||| || ||||| ||| |||| Sbjct 4463 TGTCGTTGACGAAGCTGTTCATGATGCTCATCGCCTTGGACGAAATGCCAGTGTCCGGGT 4522 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || ||||| ||||||||||||||| Sbjct 4523 GGACTTGCTTCAGCACCTTGTAGATG 4548 >seq51029 Length=496 Score = 141 bits (156), Expect = 1e-27 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| || ||| || || ||||| ||||| ||||| | || Sbjct 183 GCTTGGCCAGCTCACCGGGCAGGAGCAGACGGACCGCGGTTTGGATTTCGCGGGACGTGA 242 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| ||||||||| |||||||||| ||| ||||||| | | ||||| |||| | Sbjct 243 TCGTCGAGCGCTTGTTGTAGTGCGCCAGTCGGGACGCCTCGGCGGCAATGCGCTCGAAGA 302 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||| ||||| |||| || ||||| ||| |||| Sbjct 303 TGTCGTTGACGAAGCTGTTCATGATGCTCATCGCCTTGGACGAAATGCCAGTGTCCGGGT 362 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || ||||| ||||||||||||||| Sbjct 363 GGACTTGCTTCAGCACCTTGTAGATG 388 >seq9162 Length=7593 Score = 122 bits (134), Expect = 1e-21 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||||||||| ||||||||| | |||||| || || | || || ||| | Sbjct 3043 AGAAGCGCACGGACGACATCAGCTCTTGGGACGCCGATTTCCTGAAAGTAGACCAGGGAA 2984 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | ||||| ||||||||||| || || || ||| | ||||||||| || || ||| | Sbjct 2983 CGCTCTTCGAGTTGATCCTGGCGGCTAATTACTTGGACATCAAGGGCCTACTGGATGTGA 2924 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| | || |||||||||||||||||||| | || || ||||| |||||||| | Sbjct 2923 CTTGCAAGACGGTCGCCAACATGATCAAGGGCAAAACCCCGGAAGAGATTCGCAAGACGT 2864 Query 1592286 TTAACATCAAGTACG 1592300 | ||||||||| ||| Sbjct 2863 TCAACATCAAGAACG 2849 >seq38620 Length=1898 Score = 118 bits (130), Expect = 1e-20 Identities = 167/231 (72%), Gaps = 9/231 (4%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 ||||||||||| ||||| ||||| || | ||| || ||||| | |||||||||| Sbjct 59 CCTTCGTCGCGCGAGATCAGCTCGTTCGAGAACGTGAGTCCTGGCATCAAGCCGCGCTTC 118 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || ||||| || |||| |||| ||||| || ||||||||| ||||| ||||| || || Sbjct 119 TTAAGCCAGAAAATGGCCGCA-AAACTACCGCTGAAAAAGATACCCTCCACGGCAGCGAA 177 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTT--GATCCACTTCATCGCC 869356 | | | | ||| || ||||| | |||| || | || |||||| |||| ||| Sbjct 178 GGCAACAACCCGTTCACCAAAGTT-----GGCCTTCTTGCTTGAGATCCAGTTCAGAGCC 232 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGG 869407 || |||||||| || |||| |||| | ||| ||||| ||| ||| ||| Sbjct 233 CAATCGGCCTTCTTTTTCACGCACGGTAGCGTCTCGATCGCGTTAAACAGG 283 Score = 86.0 bits (94), Expect = 8e-11 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 869635 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGAC 869694 ||||| ||| || || |||| |||||| ||||| ||| | | || | || || || Sbjct 420 GTGGACGTTTTCCATCGCGACCTGGAAACCGTAGAAGCAGCGGGCTTCCGTAACCTGCAC 479 Query 869695 CTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAA 869754 ||||| ||||||| | ||||||||||| |||||||| || ||||| || || Sbjct 480 CTCCTGGCTGAACCGCTCCACCAGGTTCTCGTTTACGATGCCATCCGAAGCGGCAAAGAA 539 Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCG-TCGTCGCTGAGCGACACCCAGTGGACGG 869813 || || |||||| ||| ||||| |||||| ||| | | | ||| |||||| Sbjct 540 TGCGAGCACGTGCGAGATGAAGTGACGCTCGCTCGGC-TTCAACGATTCCCAGTCCTTCA 598 Query 869814 TGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864 |||| ||| |||||||| || ||||||||| || || || |||| Sbjct 599 TGTCCTTCGAGAGATCCACCTCTTCCACGGTCCAGAAGGATGCTTCAGCCT 649 >seq1636 Length=7642 Score = 91.5 bits (100), Expect = 2e-12 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || |||||||| |||||||||| || | ||||| ||||| ||||| | || ||||| Sbjct 4597 TGATCGACGTACCGCGCCGTGTTATTGTACACGCGAAGCATCGGCACCAAACCATTGGAG 4538 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 || || |||||||| | ||| | || || || | ||| || | || Sbjct 4537 ATTCCATTTGTGCCCGCGATGTACGTTCCCTTCGCACGGATACAATGCACGTTCAGCCCA 4478 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 ||||| ||||| ||||| || || || ||||||||||| ||||| |||||||| || || Sbjct 4477 ATGCCACCGGCTGACTTTGATATCAGGGCGCACTGTTTCAGCGTATCGTAGATACCGTCA 4418 Query 1630246 ATCGAGTCGGCCTTCAT-GTCCACGAGAAAGCACGACGA 1630283 || |||| | ||| ||| || || ||||| || || Sbjct 4417 ATGCTGTCGTCGGACATCGTCAAC-AGGAAGCAGGAAGA 4380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6102949962062216