Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2157 187 4e-41 seq51029 183 5e-40 seq9162 113 7e-19 seq38620 105 1e-16 seq40921 102 1e-15 seq1636 86.0 1e-10 >seq2157 Length=6562 Score = 187 bits (206), Expect = 4e-41 Identities = 186/241 (77%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || || || |||||||||||| ||||||| || ||| ||| Sbjct 4304 TGTACTTGGTGACGGCCTTCGTGCCTTCGGAGACGGCGTGCTTGGCCAGCTCACCGGGCA 4363 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||| || || ||||| ||||| ||||||| |||||| ||||||||| | Sbjct 4364 GGAGCAGACGGACCGCGGTTTGGATTTCGCGGGACGTGATCGTCGAGCGCTTGTTGTAGT 4423 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||| ||| ||||||| | ||||||| |||| ||||||||||| || ||||| Sbjct 4424 GCGCCAGTCGGGACGCCTCGGCGGCGATGCGCTCGAAGATGTCGTTGACGAAGCTGTTCA 4483 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| ||| || ||||| ||| ||||| || ||||| |||||||||| Sbjct 4484 TGATGCTCATCGCCTTGGACGAAATGCCAGTGTCCGGGTGGACTTGCTTCAGCACCTTGT 4543 Query 1485710 A 1485710 | Sbjct 4544 A 4544 >seq51029 Length=496 Score = 183 bits (202), Expect = 5e-40 Identities = 185/241 (77%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || || || |||||||||||| ||||||| || ||| ||| Sbjct 144 TGTACTTGGTGACGGCCTTCGTGCCTTCGGAGACGGCGTGCTTGGCCAGCTCACCGGGCA 203 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||| || || ||||| ||||| ||||||| |||||| ||||||||| | Sbjct 204 GGAGCAGACGGACCGCGGTTTGGATTTCGCGGGACGTGATCGTCGAGCGCTTGTTGTAGT 263 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||| ||| ||||||| | | ||||| |||| ||||||||||| || ||||| Sbjct 264 GCGCCAGTCGGGACGCCTCGGCGGCAATGCGCTCGAAGATGTCGTTGACGAAGCTGTTCA 323 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| ||| || ||||| ||| ||||| || ||||| |||||||||| Sbjct 324 TGATGCTCATCGCCTTGGACGAAATGCCAGTGTCCGGGTGGACTTGCTTCAGCACCTTGT 383 Query 1485710 A 1485710 | Sbjct 384 A 384 >seq9162 Length=7593 Score = 113 bits (124), Expect = 7e-19 Identities = 145/198 (73%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCG--AGGTCGACCAAC 2035623 || |||||||| |||||||| | |||||| | | ||| | | || ||||| Sbjct 3044 GAGAAGCGCACGGACGACATCAGCTCTTGGGAC--GCCGATTTCCTGAAAGTAGACCAGG 2987 Query 2035624 CCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATT 2035683 || ||||| ||||||||||| || || || ||| | ||||||||| ||| || ||| Sbjct 2986 GAACGCTCTTCGAGTTGATCCTGGCGGCTAATTACTTGGACATCAAGGGCCTACTGGATG 2927 Query 2035684 TGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGA 2035743 || |||||||| || |||||| | ||||||||||| | || || || || ||||||| Sbjct 2926 TGACTTGCAAGACGGTCGCCAACATGATCAAGGGCAAAACCCCGGAAGAGATTCGCAAGA 2867 Query 2035744 CCTTTAACATCAAGTACG 2035761 | || ||||||||| ||| Sbjct 2866 CGTTCAACATCAAGAACG 2849 >seq38620 Length=1898 Score = 105 bits (116), Expect = 1e-16 Identities = 163/230 (71%), Gaps = 7/230 (3%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||||||||| ||||| ||||| || ||| || ||||| | |||||||||| Sbjct 59 CCTTCGTCGCGCGAGATCAGCTCGTTCGAGAACGTGAGTCCTGGCATCAAGCCGCGCTTC 118 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| || ||||| ||||| || ||||||||| ||||| ||||| || ||| Sbjct 119 TTAAGCCAGAAAATGGCCGCAAAACTACCGCTGAAAAAGATACCCTCCACGGCAGCGAAG 178 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTT--GATCCACTTCATCGCCC 794518 | || | ||| || | ||||| |||| |||| || |||||| |||| |||| Sbjct 179 GCAACAACCCGTTC-ACCAAAGT----TGGCCTTCTTGCTTGAGATCCAGTTCAGAGCCC 233 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGG 794568 | || ||||| || |||| | || | ||| ||||| ||| ||| ||| Sbjct 234 AATCGGCCTTCTTTTTCACGCACGGTAGCGTCTCGATCGCGTTAAACAGG 283 >seq40921 Length=1557 Score = 102 bits (112), Expect = 1e-15 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || ||||||||||| || || ||||||||||| |||||| ||||| ||| Sbjct 736 TGTACTTCGTCACGGCCTTGGTGCCTTCCGAGACGGCGTGTTTGGCCAACTCGCCCGGCA 677 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || ||||| ||||||||||||||||||| ||| ||| |||||||| Sbjct 676 GCAGCAATCGCACCGCGGTCTGGATCTCGCGGGACGTGATGGTGGACCGCTTGTTGTAAT 617 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| ||| || |||| | || || || | |||||||| ||||| ||||| Sbjct 616 GGGCCAACCGGGATGCTTCGGCCGCAATCCGCTCAAAGATGTCGTTCACAAAGCTGTTCA 557 Query 1485650 TGAT 1485653 | || Sbjct 556 TAAT 553 >seq1636 Length=7642 Score = 86.0 bits (94), Expect = 1e-10 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 2070123 CATCATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAG 2070182 ||||| | |||||| ||||||| || ||||| || | || || |||| |||||||| Sbjct 5279 CATCAGGATAAACGCATCGGCCATACCTTGCACACCAATACCGATGGGCCTGTGGCGCAT 5220 Query 2070183 GTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGAT 2070227 |||||| | || ||||| || ||||| |||| |||||||||||| Sbjct 5219 GTTCGAACGACGCGCCTCCGGAACCGGATAGTAGTTGATGTCGAT 5175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7910816191410072