Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq20890 132 3e-26 seq42053 111 1e-19 seq20012 111 1e-19 seq3519 82.4 5e-11 >seq20890 Length=2679 Score = 132 bits (146), Expect = 3e-26 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| ||| ||||||||||||||| || || || || |||| | || Sbjct 1425 AGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGACAGCGTGCGTCCGTCC 1484 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| |||||||| ||||| || ||||| ||| | || | ||||||||||| Sbjct 1485 TCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCC 1544 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||| || || || |||| || || || || |||| ||| |||| Sbjct 1545 TGGATCTTGGCTTTCAC--ATTCTCGATCGTATCCGAGGGTTCAACCTCAAGGGTAATGG 1602 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| ||||||||||| || || ||||||||||| Sbjct 1603 TCTTACCCGTGAGGGTTTTCACGAAGATCTGCAT 1636 >seq42053 Length=1259 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||||||||||||||| ||||| || ||| |||| | || Sbjct 1220 AGGACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGTCCGTCC 1161 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||||| || ||||| ||| | || | || |||||||| Sbjct 1160 TCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 1101 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||| || || || || | || | |||||| || | || |||| Sbjct 1100 TGGATCTTAGCTTTCAC--ATTCTCGATAGTATCCGAAGGCTCGACCTCCAGAGTGATGG 1043 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || || ||||| || ||||||||||| Sbjct 1042 TCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1009 >seq20012 Length=3655 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||||||||| ||| ||||||||||| |||||||| || | | || |||| ||| Sbjct 2504 ACCAGGTGAAGGGTAGATTCCTTCTGAATATTATAGTCAGACAACGTACGACCATCCTCC 2563 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || || || |||||||||||||| || ||||| ||| | || | || || || || | Sbjct 2564 AGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTATCCTGG 2623 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || ||| || || | | || | ||| || |||||| || | ||||||||||| Sbjct 2624 ATCTTTGCCTTCACATTTTCGATGGTGTCAGAGGGCTCGACCTCGAGAGTTATGGTCTTC 2683 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| || || || || |||||||| Sbjct 2684 CCAGTGAGCGTTTTGACGAAAATCTGCAT 2712 >seq3519 Length=1813 Score = 82.4 bits (90), Expect = 5e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | ||| | || |||| || | || || ||||| ||||| || |||| Sbjct 1617 TTCCTCCTCGCAAACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCG 1676 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | | |||| |||| ||||| ||||||||||||||||| || || || || ||| ||| Sbjct 1677 ACAAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCG 1736 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACG 34903 | | || ||||| || | || ||| |||||| Sbjct 1737 GGATTCCTTCCTTATCCTGAATCTTTGCCTTGACG 1771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325490171038712