Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq50967 87.8 1e-12 seq42053 84.2 2e-11 seq20012 82.4 6e-11 >seq50967 Length=297 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 107565 TTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGCGATACTGTC 107624 || ||||||||| | || |||||||| || || |||| |||| | |||||| || Sbjct 297 TTCGTCAAAACTCTGACCGGCAAAACGATCACTCTCGAGGTGGAGCCATCCGATACGATC 238 Query 107625 GGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTT 107684 | | || || ||||||| ||||||||||| | || ||||| ||| | ||| Sbjct 237 GAGAACGTCAAGGCAAAGATTCAGGATAAAGAAGGAATCCCGCCAGATCAACAGCGTCTT 178 Query 107685 ATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAAG 107744 || | || || || |||||||| || | || || |||| |||||||| || || Sbjct 177 ATCTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACCTTGTCGGATTACAACATCCAGAAA 118 Query 107745 GAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || || |||| |||||||| | ||||||| || Sbjct 117 GAATCGACTCTGCATTTGGTGTTGCGTCTGCGAGGAGG 80 >seq42053 Length=1259 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || ||| | || ||||| ||||| || | || ||| || Sbjct 1009 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCTTCG 1068 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| ||| | || ||| ||||| || || |||||| | ||| |||||| Sbjct 1069 GATACTATCGAGAATGTGAAAGCTAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 1128 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | || | || || || ||||| ||||||| || || | ||||||||| Sbjct 1129 CAGCGTTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGACGCACCCTGTCCGACTACAAC 1188 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| |||||||| || |||||| |||| Sbjct 1189 ATTCAGAAGGAGTCGACCTTGCACTTGGT 1217 >seq20012 Length=3655 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| ||||| |||||||| | || || || ||||| || |||| ||| | Sbjct 2715 AAGATGCAGATTTTCGTCAAAACGCTCACTGGGAAGACCATAACTCTCGAGGTCGAGCCC 2656 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || || ||| | || || |||||| ||||||||||| | || ||| Sbjct 2655 TCTGACACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAAGAAGGTATTCCACCAGAT 2596 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || || |||||||||||||| | || || | ||||| Sbjct 2595 CAGCAGCGTCTGATCTTCGCCGGCAAACAGCTGGAGGATGGTCGTACGTTGTCTGACTAT 2536 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAA 107785 || ||||| ||||| ||||| | ||| |||||||| || | || || || || Sbjct 2535 AATATTCAGAAGGAATCTACCCTTCACCTGGTGTTGCGACTTCGTGGTGGTAA 2483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398628639796072