Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq11662 141 7e-28 seq3179 100 2e-15 >seq11662 Length=3363 Score = 141 bits (156), Expect = 7e-28 Identities = 134/171 (78%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 637123 ATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCA 637182 ||||| || | ||| || || || | || || ||||||||| ||||||||||| ||||| Sbjct 2623 ATTGTAGACTTTTCCTCACCCAACGTCGCAAAGGAAATGCATGTTGGACATTTACGATCA 2682 Query 637183 ACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGT 637242 ||||| |||||||| || |||||| || | | ||| | |||||| |||||| |||| Sbjct 2683 ACTATAATTGGTGATTCAATTTGTCGGTTCCTTGAATTTCTTGGACATGATGTTCTTCGT 2742 Query 637243 ATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTAT 637293 || ||||| | ||||||||||||||||| || || ||||| |||||| || Sbjct 2743 ATAAATCACATCGGTGATTGGGGAACTCAGTTTGGAATGTTGATTGCTCAT 2793 >seq3179 Length=6791 Score = 100 bits (110), Expect = 2e-15 Identities = 214/316 (68%), Gaps = 13/316 (4%) Strand=Plus/Minus Query 400294 AAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTT 400353 || |||||||| || | || |||||||| ||||| ||||| || ||| | || || | Sbjct 4756 AATTGTACCCTCATCCTAACGGAGGGAGACTCAGCCAAAACGTTGGCTGTTTCAGGGTTA 4697 Query 400354 AATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTT 400413 ||| |||| |||| || || ||||| || || |||| ||||||||||| || Sbjct 4696 GGAGTTGTTGGTCGAGACACGTACGGTGTTTTTCCTCTGCGAGGTAAACTTTTGAACGTC 4637 Query 400414 AGGGATGCTAGTCCTaaaaaaaTTGCCGATAATGAGGAAATTACAGCAA--TCaaaaaaa 400471 | || |||| | ||| | ||| || |||| || || || || ||| || | Sbjct 4636 CGCGAAGCTACGCATAAGCAGATTCTTGAGAATGCTGAGAT--CAATAACCTCATCAAGA 4579 Query 400472 TTGTTGGACT--TGAACAAG--GAAAAGTTTA-----TGATGATCTCAAAGGTTTACGAT 400522 || |||| || | | ||| |||| | || || ||||| || | |||||||| Sbjct 4578 TTCTTGGCCTGCAGTATAAGAAGAAATATCTAACGATGGACGATCTGAAGGCTTTACGAT 4519 Query 400523 ATGGTAGTATTATGATTCTTGCTGATCAAGATGTTGATGGGTACCATATCAAAGGATTAA 400582 |||| | | |||||| | | ||||| ||| ||||||| ||| ||||| |||||| Sbjct 4518 ATGGAAAAGTGATGATTATGACCGATCAGGATCAGGATGGGTCCCACATCAAGGGATTAC 4459 Query 400583 TCATGAATTTTATCCA 400598 | || |||||||| || Sbjct 4458 TGATAAATTTTATACA 4443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738124158928848