Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq50967 107 2e-18 seq38620 98.7 1e-15 seq1636 95.1 1e-14 seq3519 84.2 2e-11 >seq50967 Length=297 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||||||||| | |||||| || ||||| | || |||||||| || ||||||||||| Sbjct 79 GCCTCCTCGCAGACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGA 138 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| ||||| || || || || || |||| ||||| || ||||| || || Sbjct 139 CAAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGG 198 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || |||||||| || ||| ||| || | | || | ||| || | || || || Sbjct 199 GATTCCTTCTTTATCCTGAATCTTTGCCTTGACGTTCTCGATCGTATCGGATGGCTCCAC 258 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAA 137402 || | ||| | ||| |||||||||| ||||| ||||| Sbjct 259 CTCGAGAGTGATCGTTTTGCCGGTCAGAGTTTTGACGAA 297 >seq38620 Length=1898 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 50199 AACGCTTTCGATAATATTCCGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGACT 50258 ||||| |||| | | ||||| ||| || |||| ||||||||| |||| |||| Sbjct 276 AACGCGATCGAGACGCTACCGTGCGTGAAAAAGAAGGCCGATTGGGCTCTGAACTGGATC 217 Query 50259 aaaaacaaaaaa-CTTACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGT 50317 || ||| || | ||||||| ||||| | || || || || || || ||| | Sbjct 216 TCAAGCAAGAAGGCCAACTTTGGT-GAACGGGTTGTTGCCTTCGCTGCCGTGGAGGGTAT 158 Query 50318 GtttttttCCGGTAGCTTTGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCCGG 50377 ||||| |||||| ||||| ||||| || | |||| | ||| | ||||| || Sbjct 157 CTTTTTCAGCGGTAGTTTTGCGGCCATTTTCTGGCTTAAGAAGCGCGGCTTGATGCCAGG 98 Query 50378 CCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTG 50437 |||||||| |||||| |||| ||||||||||||||| ||||| |||||||| || Sbjct 97 ACTCACGTTCTCGAACGAGCTGATCTCGCGCGACGAAGGACTGCACTGCGACTTTGCCTG 38 Query 50438 T 50438 | Sbjct 37 T 37 >seq1636 Length=7642 Score = 95.1 bits (104), Expect = 1e-14 Identities = 288/437 (66%), Gaps = 6/437 (1%) Strand=Plus/Minus Query 150722 TTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTAC-TGTGAAACGG 150780 || || ||||||||||| ||||||| || || || | | | || |||| | ||| Sbjct 5647 TTCACCACTTGAAATTCTCCCGACAGGACGCGCCTATTATAAACGTTCGATGTGTA-CGG 5589 Query 150781 TTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCAC 150840 ||| || ||||| |||||| | ||||||||||| | ||||||||||| |||| Sbjct 5588 TTCGAAGGACTCATTGTTGCCCAAAATTTGTGCGGTTGAAGCCGTCGGCATCGGTGCCAA 5529 Query 150841 AAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCCCA 150900 || | ||||| || | || | || || || |||||| | | ||||| ||| Sbjct 5528 CAGTAGAGAATTGCGAATGCCATGCTTGGCAATCTTCTCTTTCAATTCCGCCCAGTTCCA 5469 Query 150901 TAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTGCT 150960 | || ||| | | ||||||| |||||| ||||| || || | ||| | ||| Sbjct 5468 CAGGTCCGTAGGTGTCTTGTTCCACATATCGTACTGCAAGATACCCTTGCTTACCGGGCT 5409 Query 150961 ACCGGCAAACGTGCTATAAGGCTCACTAAC-AGATGCCAGTTCGTAACTGGCCTCGAGCG 151019 ||| | |||| || | | || | || | |||| ||| | || ||||| | | Sbjct 5408 ACCTTCGTACGT-CTCGTATGGTCCGTCACGGGCAGCCAACTCGCAGCTAGCCTCCAAGG 5350 Query 151020 CAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCACGT 151079 || | | || | |||||| ||||| | ||| | | ||| | || ||| ||| Sbjct 5349 CACCGTAGTAGATTGTTTCAAACATTTGCTGATTGAGTTTTTGGGCCTCCTCACTCTCGT 5290 Query 151080 A-CGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGGA 151138 | ||||| |||| || | ||| |||||||||| |||||| | || || |||||||| Sbjct 5289 ATGGGTAT-CGCATCAGGATAAACGCATCGGCCATACCTTGCACACCAATACCGATGGGC 5231 Query 151139 CGATGGCGCATATTAGA 151155 | |||||||| || || Sbjct 5230 CTGTGGCGCATGTTCGA 5214 >seq3519 Length=1813 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 |||||||| |||||||| || ||||| | || |||||||| || ||||||||||| | Sbjct 1619 CCTCCTCGCAAACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGAC 1678 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| ||||| || || || || || |||| ||||| || ||||| || || Sbjct 1679 AAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGGG 1738 Query 137305 ATGCCTTCTTTGTC 137318 || ||||| || || Sbjct 1739 ATTCCTTCCTTATC 1752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488232260073600