Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq50967 154 3e-32 seq3519 152 1e-31 seq2949 143 5e-29 seq41025 107 4e-18 >seq50967 Length=297 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| || ||||| || || |||||||| ||||||||||| || || ||||| || Sbjct 80 CCTCCTCGCAGACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGAC 139 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| ||||| || || ||||| || ||||| || | ||||||||||| || Sbjct 140 AAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGGG 199 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| ||||| ||||||||||| || || || || |||||||| || || || Sbjct 200 ATTCCTTCTTTATCCTGAATCTTTGCCTTGACGTTCTCGATCGTATCGGATGGCTCCACC 259 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 || | ||| ||||| ||||| |||| || || || || Sbjct 260 TCGAGAGTGATCGTTTTGCCGGTCAGAGTTTTGACGAA 297 >seq3519 Length=1813 Score = 152 bits (168), Expect = 1e-31 Identities = 150/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| |||||||| || || |||||||| ||||||||||| || || ||||| || Sbjct 1619 CCTCCTCGCAAACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGAC 1678 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| ||||| || || ||||| || ||||| || | ||||||||||| || Sbjct 1679 AAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGGG 1738 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||||||||| ||||||||||| || || || || |||||||| || || || Sbjct 1739 ATTCCTTCCTTATCCTGAATCTTTGCCTTGACGTTCTCGATCGTATCGGATGGCTCCACC 1798 Query 82764 TCCAAAGTTATCGT 82777 || | ||| ||||| Sbjct 1799 TCGAGAGTGATCGT 1812 >seq2949 Length=10021 Score = 143 bits (158), Expect = 5e-29 Identities = 317/460 (69%), Gaps = 14/460 (3%) Strand=Plus/Minus Query 198183 GAACTGTCGGATAATTTTTGTTACTATAATAAACATTACGATAGCGT-ACAGTCTACTCA 198241 ||||||||||| || ||||||| | |||| ||| | || |||| | | | || || | Sbjct 9377 GAACTGTCGGACAACTTTTGTTTCCATAACAAAAACTATGATAACCTTAAAGGAGCCT-A 9319 Query 198242 CGCATGGGCT-AGAAGAACATTAGAAGATCACATTAATGATCCTAGAAAGTATAT--CTA 198298 || |||||| |||||| | || | || ||| || ||| || |||||| ||| Sbjct 9318 CGAGTGGGCTCAGAAGA-CGTTGAACGACCACCGCAAGGATAAACGA--GTATATTGCTA 9262 Query 198299 TTCTATTAAACAACTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCATCGCAAAT 198358 | | | || |||| ||| ||||||| ||| | ||||| | | || | Sbjct 9261 CACGCGGGACGAGCTTGAAACGGCCAAAACACACGACGACTTGTGGAACTCGGCTCAGCT 9202 Query 198359 ACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGAT 198418 ||||||| ||| ||||| |||||||| | || | ||||||||||||| || || || Sbjct 9201 ACAGATGGTAAAGGAAGGCAAAATGCACGGCTTCCTGCGAATGTACTGGGCGAAGAAAAT 9142 Query 198419 ACTTGAATGGACAAGAACACCGGAAGACGCTTT-GAGTTATAGTATCTATCTAAACAATA 198477 || |||||||| | ||| || ||||| || | || | | |||||||| ||| | Sbjct 9141 CCTCGAATGGACCAAAACGCCTGAAGAGGCGCTCGAATCAGCC-ATCTATCTGAACGACC 9083 Query 198478 AGTACGAACTAGACGGCACG-GATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGC 198536 |||| || || || ||| ||||| ||||| ||||| || ||||||||||| | | || Sbjct 9082 GGTACAGTCTCGATGG-ACGCGATCCAAACGGGTACGTTGGCTGTATGTGGTCGA-TCGC 9025 Query 198537 GGAT-TACATGATCGAGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAA 198595 || | | ||||||| | |||||||| | ||||||||| ||||| |||| ||||| Sbjct 9024 GGGTATCCATGATCAGGGCTGGAAAGAGCGCGATATATTTGGAAAGATTCGATACATGAA 8965 Query 198596 TTATGAGGGTTCTAAGAAAAAATTTGATGTTGCTGCATTT 198635 || || || | || | |||||| ||||| ||| ||| Sbjct 8964 CTACGAAGGCTGCAAAAGAAAATTCAATGTTAATGCGTTT 8925 >seq41025 Length=2165 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 82677 AAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACA 82736 ||||| || | ||||||||||| || |||||||||||||| ||||||||||| || || Sbjct 2 AAGATAAGACGCTGTTGATCTGGTGGGATTCCTTCCTTATCCTGAATCTTTGCCTTGACG 61 Query 82737 TTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTT 82796 || || |||||||| ||||| || || | ||| |||||||| || |||| || || Sbjct 62 TTCTCGATCGTATCGGATGGTTCCACCTCGAGAGTGATCGTCTTTCCGGTCAGAGTTTTG 121 Query 82797 ACAAATATCTGCAT 82810 || || || ||||| Sbjct 122 ACGAAGATTTGCAT 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981185033465272