Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq20890 111 1e-19 seq50967 104 2e-17 seq3519 98.7 7e-16 seq42053 87.8 1e-12 >seq20890 Length=2679 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||| ||| || || ||| || || ||||||||||| || Sbjct 1410 CCACCACGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGAC 1469 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| |||| |||| || || ||||| ||||||| ||||||||||||| | || Sbjct 1470 AGCGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGG 1529 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| || || |||| |||| || | || || | ||| || Sbjct 1530 ATACCCTCCTTGTCCTGGATCTTGGCTTTC-ACATTCTCGATCGTATCCGAGGGTTCAAC 1588 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || || ||||| || | ||||| || ||||||||||| Sbjct 1589 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCACGAAGATCTGCAT 1636 >seq50967 Length=297 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| || ||| ||||||||||| ||||| ||||| || ||||||||||| || Sbjct 80 CCTCCTCGCAGACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGAC 139 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| | || |||| || |||||||| || || | |||||| |||||| |||| Sbjct 140 AAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGGG 199 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || ||| || || | || | || | || ||| || ||||| Sbjct 200 ATTCCTTCTTTATCCTGAATCTT-TGCCTTGACGTTCTCGATCGTATCGGATGGCTCCAC 258 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 || | ||||||||||| || || | ||||| || || Sbjct 259 CTCGAGAGTGATCGTTTTGCCGGTCAGAGTTTTGACGAA 297 >seq3519 Length=1813 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| |||||| ||||||||||| ||||| ||||| || ||||||||||| || Sbjct 1619 CCTCCTCGCAAACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGAC 1678 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| | || |||| || |||||||| || || | |||||| |||||| |||| Sbjct 1679 AAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGGG 1738 Query 33643 ACACCTTCTTTGTC 33656 | ||||| || || Sbjct 1739 ATTCCTTCCTTATC 1752 >seq42053 Length=1259 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | ||||| || | || ||| || || |||||||| ||||| Sbjct 1236 ACCACCACGCAGACGAAGGACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAGTCGGA 1177 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| |||| || | || || || || || |||||||||||||||||| | || Sbjct 1176 CAGGGTGCGTCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGG 1117 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || |||| |||| || | || || | || | Sbjct 1116 AATGCCTTCCTTGTCCTGGATCTTAGCTTTC-ACATTCTCGATAGTATCCGAAGGCTCGA 1058 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || || |||||||||||| Sbjct 1057 CCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATA 1008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328499497628160