Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq50967 136 9e-27 seq20012 114 3e-20 seq3519 114 3e-20 >seq50967 Length=297 Score = 136 bits (150), Expect = 9e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| || || || |||||||||||| | || ||||| || || || |||| Sbjct 292 CAAAACTCTGACCGGCAAAACGATCACTCTCGAGGTGGAGCCATCCGATACGATCGAGAA 233 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||||||| || ||||||||||| ||| || || | |||||||| Sbjct 232 CGTCAAGGCAAAGATTCAGGATAAAGAAGGAATCCCGCCAGATCAACAGCGTCTTATCTT 173 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||||||| |||||||||| | || ||| | ||||||||| |||||||||| || Sbjct 172 CGCCGGAAAGCAGCTGGAAGATGGTCGCACCTTGTCGGATTACAACATCCAGAAAGAATC 113 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| || | || ||| | || ||| Sbjct 112 GACTCTGCATTTGGTGTTGCGTCTGCGA 85 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 ||| || | ||| || | || ||||| || |||||||||| || || || | ||| || Sbjct 85 TCGCAGACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGACAAGGT 144 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||||||||||||||||||||||||| || |||||| Sbjct 145 GCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGA 190 >seq20012 Length=3655 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||||||||| || || || || ||| | || || || |||||| Sbjct 2709 CAGATTTTCGTCAAAACGCTCACTGGGAAGACCATAACTCTCGAGGTCGAGCCCTCTGAC 2650 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| |||||| || || |||||||| ||| || || || Sbjct 2649 ACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAAGAAGGTATTCCACCAGATCAGCAG 2590 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| || ||| |||| ||||| | || ||| | || || || | Sbjct 2589 CGTCTGATCTTCGCCGGCAAACAGCTGGAGGATGGTCGTACGTTGTCTGACTATAATATT 2530 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || ||||| |||||||| || ||| ||||||| Sbjct 2529 CAGAAGGAATCTACCCTTCACCTGGTGTTGCGACTTCG 2492 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||| ||| || |||||||| ||||| || ||||| | ||||||||||| ||| || Sbjct 2492 CGAAGTCGCAACACCAGGTGAAGGGTAGATTCCTTCTGAATATTATAGTCAGACAACGTA 2551 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||| |||||||| || ||||||||||| || || || ||| Sbjct 2552 CGACCATCCTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGA 2596 >seq3519 Length=1813 Score = 114 bits (126), Expect = 3e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 206202 AACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCA 206261 |||||||||| | || ||||| || || || |||| || ||| ||||||||| Sbjct 1813 AACGATCACTCTCGAGGTGGAGCCATCCGATACGATCGAGAACGTCAAGGCAAAGATTCA 1754 Query 206262 AGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGA 206321 || || |||||||| ||| || || | ||||||||||||||||||||| |||| Sbjct 1753 GGATAAGGAAGGAATCCCGCCAGATCAACAGCGTCTTATCTTCGCCGGAAAGCAGCTGGA 1694 Query 206322 AGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 |||||| | || ||| | ||||||||| |||||||||| || ||||| || Sbjct 1693 AGATGGTCGCACCTTGTCGGATTACAACATCCAGAAAGAATCGACTCTGCA 1643 Score = 89.7 bits (98), Expect = 1e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 204770 TGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 204829 || ||||| || |||||||||| || || || | ||| || | ||||||||||||||| Sbjct 1643 TGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGACAAGGTGCGACCATCTTCCAGCTGC 1702 Query 204830 TTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||||||||| || |||||| Sbjct 1703 TTTCCGGCGAAGATAAGACGCTGTTGA 1729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181047827151208