Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2157 145 1e-28 seq51029 141 1e-27 seq38620 118 2e-20 seq1636 93.3 6e-13 >seq2157 Length=6562 Score = 145 bits (160), Expect = 1e-28 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| ||||| || ||||| || ||| || ||||| | | Sbjct 4547 ATCTACAAGGTGCTGAAGCAAGTCCACCCGGACAC---TGGCATTTCGTCCAA---GGCG 4494 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || ||||||||||| |||| ||||||| | ||||||| Sbjct 4493 ATGAGCATCATGAACAGCTTCGTCAACGACATCTTCGAGCGCATCGCCGCCGAGGCGTCC 4434 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||||| || |||||||||| |||||| | ||||| ||||| ||||| || Sbjct 4433 CGACTGGCGCACTACAACAAGCGCTCGACGATCACGTCCCGCGAAATCCAAACCGCGGTC 4374 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||| || ||| ||| || ||||||| ||||||||||||||| ||||| Sbjct 4373 CGTCTGCTCCTGCCCGGTGAGCTGGCCAAGCACGCCGTCTCCGAAGGCAC 4324 >seq51029 Length=496 Score = 141 bits (156), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| ||||| || ||||| || ||| || ||||| | | Sbjct 387 ATCTACAAGGTGCTGAAGCAAGTCCACCCGGACAC---TGGCATTTCGTCCAA---GGCG 334 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || ||||||||||| |||| ||||| | | ||||||| Sbjct 333 ATGAGCATCATGAACAGCTTCGTCAACGACATCTTCGAGCGCATTGCCGCCGAGGCGTCC 274 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||||| || |||||||||| |||||| | ||||| ||||| ||||| || Sbjct 273 CGACTGGCGCACTACAACAAGCGCTCGACGATCACGTCCCGCGAAATCCAAACCGCGGTC 214 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||| || ||| ||| || ||||||| ||||||||||||||| ||||| Sbjct 213 CGTCTGCTCCTGCCCGGTGAGCTGGCCAAGCACGCCGTCTCCGAAGGCAC 164 >seq38620 Length=1898 Score = 118 bits (130), Expect = 2e-20 Identities = 187/264 (71%), Gaps = 3/264 (1%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855 |||| || || ||||| ||||||| || ||||| || ||| |||| | ||| Sbjct 649 AGGCTGAAGCATCCTTCTGGACCGTGGAAGAGGTGGATCTCTCGAAGGACATGAAGGACT 590 Query 1455856 GGGTGTCGCTGAGCGACGA-CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGC 1455914 ||| ||| ||| | ||| |||||| || |||||| |||||| ||||| || ||| || Sbjct 589 GGGAATCGTTGAA-GCCGAGCGAGCGTCACTTCATCTCGCACGTGCTCGCATTCTTT-GC 532 Query 1455915 CGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT 1455974 ||| ||||||||||| ||||||||||| | || || | | ||||| || | Sbjct 531 CGCTTCGGATGGCATCGTAAACGAGAACCTGGTGGAGCGGTTCAGCCAGGAGGTGCAGGT 472 Query 1455975 GCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034 | || || || | || ||||| |||||| |||| || |||||| ||||| ||||| Sbjct 471 TACGGAAGCCCGCTGCTTCTACGGTTTCCAGGTCGCGATGGAAAACGTCCACAGTGAAAT 412 Query 1456035 CTACTCGCTCCTGATCGACACCTA 1456058 ||||| || |||||||| || || Sbjct 411 GTACTCACTGCTGATCGATACGTA 388 Score = 104 bits (114), Expect = 3e-16 Identities = 165/230 (72%), Gaps = 10/230 (4%) Strand=Plus/Minus Query 1456086 CCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAA 1456145 ||| ||| ||| ||||| ||| | |||| |||| || |||||||| ||||| |||| Sbjct 283 CCTGTTTAACGCGATCGAGACGCTACCGTGCGTGAAAAAGAAGGCCGATTGGGCTCTGAA 224 Query 1456146 GTGGATC--AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-G 1456202 |||||| || | || |||| |||||| || ||| | || | ||| || || | Sbjct 223 CTGGATCTCAAGCAAGAAGGCCA----ACTTTGGTGAACGGGTTGTTGCCTTCGCTGCCG 168 Query 1456203 TCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGCTCAAGAAGCGCGGC 1456261 | ||||| ||||||||| || ||||| |||| |||| || ||||| |||||||||||| Sbjct 167 TGGAGGGTATCTTTTTCAGCGGTAGTTT-TGCGGCCATTTTCTGGCTTAAGAAGCGCGGC 109 Query 1456262 CTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 | ||||| || || | | | | ||||| | ||| |||||||||| Sbjct 108 TTGATGCCAGGACTCACGTTCTCG-AACGAGCTGATCTCGCGCGACGAAG 60 >seq1636 Length=7642 Score = 93.3 bits (102), Expect = 6e-13 Identities = 192/286 (67%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 259896 TGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCC 259955 ||||| ||| || |||||| || | || || | ||| ||| | || | || | Sbjct 4312 TGTCGGAGCGATTTTTCACCCATGCTTCTCCAACTATGTTTGCTGCGGCGACACAACGTC 4371 Query 259956 CGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATG 260015 ||||| ||| || ||||| |||||| ||| | ||| || || || ||||| | Sbjct 4372 CGCAGCTTTCTTCCTGCTTCCTGTTGACGATGTCCGACGACAGCATTGACGGTATCTACG 4431 Query 260016 ACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCAC 260075 | ||||| || |||||||| || || || ||| | ||||| ||||| || | || | Sbjct 4432 ATACGCTGAAACAGTGCGCCCTGATATCAAAGTCAGCCGGTGGCATTGGGCTGAACGTGC 4491 Query 260076 ACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTG 260135 | | || || ||| | ||| | |||||||| || || ||||| || | | Sbjct 4492 ATTGTATCCGTGCGAAGGGAACGTACATCGCGGGCACAAATGGAATCTCCAATGGTTTGG 4551 Query 260136 TGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 |||| ||||||||||| | || |||||||||| |||||||| || Sbjct 4552 TGCCGATGCTTCGCGTGTACAATAACACGGCGCGGTACGTCGATCA 4597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7172887526573776