Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq42053 118 1e-21 seq20890 116 3e-21 seq2949 116 3e-21 seq50967 84.2 2e-11 >seq42053 Length=1259 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| || || || |||||| ||||||||||| |||| | Sbjct 1235 CCACCACGCAGACGAAGGACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAGTCGGAC 1176 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || |||||||| || || || ||||| |||||||| || | ||| Sbjct 1175 AGGGTGCGTCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGA 1116 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||||||| |||||| |||| | | | | || || | || ||| Sbjct 1115 ATGCCTTCCTTGTCCTGGATCTTAGCTTTCACATTCTCGATAGTATCCGAAGGCTCGACC 1056 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCT 35739 |||| ||||| || || || |||| ||| ||||| || |||||||| || Sbjct 1055 TCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATACT 1006 >seq20890 Length=2679 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| ||| | || |||||| |||||||||||||| | | Sbjct 1410 CCACCACGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGAC 1469 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| ||||||||||| || || || |||| |||||||| || | || Sbjct 1470 AGCGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGG 1529 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| |||| | | | | ||| || | ||| ||| Sbjct 1530 ATACCCTCCTTGTCCTGGATCTTGGCTTTCACATTCTCGATCGTATCCGAGGGTTCAACC 1589 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTGC 35743 || | || || || |||||||| | |||||||| || |||||||| ||||| Sbjct 1590 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCACGAAGATCTGCATCTTGTGC 1643 >seq2949 Length=10021 Score = 116 bits (128), Expect = 3e-21 Identities = 204/292 (70%), Gaps = 4/292 (1%) Strand=Plus/Minus Query 44130 TTGTGGAACGCTGCCCAAACACAACTGTTGCGAGAAGGTAAAATGCACCAATACATGCGT 44189 ||||||||| | || || ||| || | ||||| ||||||||| | | |||| Sbjct 9221 TTGTGGAACTCGGCTCAGCTACAGATGGTAAAGGAAGGCAAAATGCACGGCTTCCTGCGA 9162 Query 44190 ATGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATGCGCAAACCGCGCTCGT-TCA 44248 ||||| ||| ||||| || | || ||| | || | || ||||||| ||| Sbjct 9161 ATGTACTGGGCGAAGAAAATCCTCGAATGGACCAAAACGCCTGAAGAGGCGCTCGAATCA 9102 Query 44249 TGCCATCTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAACGGGTACGTAGG 44308 |||||||||||||||||| ||||||| | || || ||||| || ||||||||||| || Sbjct 9101 -GCCATCTATCTGAACGACCGGTACAGTCTCGATGGACGCGATCCAAACGGGTACGTTGG 9043 Query 44309 ATGTATGTGGTCCATTTGCGGTGTCCACGA-CAGGGCGTGGCGAGAGCTACCCATCTACG 44367 ||||||||||| || ||| |||| || |||||| ||| ||||| || | | Sbjct 9042 CTGTATGTGGTCGATCGCGGGTATCCATGATCAGGGC-TGGAAAGAGCGCGATATATTTG 8984 Query 44368 GCAAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGTAAA 44419 | || | || |||||||||||| | || ||| ||||| || |||| || Sbjct 8983 GAAAGATTCGATACATGAACTACGAAGGCTGCAAAAGAAAATTCAATGTTAA 8932 >seq50967 Length=297 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 |||||||||||| | || || || || ||||||||||| | |||||| || | || Sbjct 94 CAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGACAAGGTGCGACCATC 153 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| || || || || | ||||| || || | || | | || || || Sbjct 154 TTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGGGATTCCTTCTTTATC 213 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||| | | | | ||| ||| | |||||||| | |||||||| Sbjct 214 CTGAATCTTTGCCTTGACGTTCTCGATCGTATCGGATGGCTCCACCTCGAGAGTGATCGT 273 Query 35704 TTTACCCGTCAAAGTTTTCACAAA 35727 ||| || |||| |||||| || || Sbjct 274 TTTGCCGGTCAGAGTTTTGACGAA 297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450505948603840