Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq885 149 5e-31 seq38620 84.2 2e-11 >seq885 Length=6935 Score = 149 bits (164), Expect = 5e-31 Identities = 277/405 (68%), Gaps = 10/405 (2%) Strand=Plus/Plus Query 19542 AAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAA-----GCAAAGA 19596 |||| ||| || || ||||| | |||||| | || ||||| ||||| || | Sbjct 5309 AAGTGGTTTACATATCATAATTTTCGATGAAATCGATGCAATTTGTAAAGCTCGCGGAAC 5368 Query 19597 GGTTCTGGTGTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||| || | |||| || || ||||| || |||||||||||||| ||| ||||| | Sbjct 5369 GGTA--GGAGGAAATTCAGGCGTTCATGATACAGTTGTCAATCAACTGCTGGCAAAAATT 5426 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTA 19713 || |||||| | || ||||||||||||| || ||||| |||||||| | ||| | Sbjct 5427 GATGGTGTTGAACAGTTGAATAATATTTTGGTCATTGGAATGACTAACCGCAGGGATATG 5486 Query 19714 ATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCC 19773 |||||| || || || |||||||||| || || | | || ||||||| | || Sbjct 5487 ATAGACGAAGCTTTGCTAAGACCCGGTCGCTTAGAGGTGCAAATGGAAATTAGTCTTCCA 5546 Query 19774 GATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAAC 19833 ||||| ||||| ||| | ||||||||||| |||||| | ||| || || Sbjct 5547 AATGAAGAAGGACGAGTGCAGATTTTAAACATCCATACACGACGAATGAAGGAATTCAAA 5606 Query 19834 CTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGC 19893 ||| | |||||||||| || ||| | | || || ||||| || ||||| Sbjct 5607 AAATTAGCTCCCGATGTAGATTTACGAGAGCTCGGAGTAAAAACTAAAAATTACAGCGGT 5666 Query 19894 GCAGAACTTGAGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 || ||||| || |||||||| | || || ||||| | ||| ||| Sbjct 5667 GCCGAACTGGAAGGATTAGTTCGTGCTGCACAATCTACTGCTATG 5711 >seq38620 Length=1898 Score = 84.2 bits (92), Expect = 2e-11 Identities = 172/247 (70%), Gaps = 9/247 (4%) Strand=Plus/Minus Query 44040 TGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAA 44098 ||||||| ||||| || || |||| |||| | ||| | || || || ||||| || || Sbjct 281 TGTTTAACGCGATCGAGACGCTACCGTGCG-TGAAAAAGAAGGCCGATTGGGCTCTGAAC 223 Query 44099 TGGATAA-ATTCAA--ATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAA 44155 ||||| | ||| | | ||||| ||||| |||| || || || | ||||| Sbjct 222 TGGATCTCAAGCAAGAAGGCCAACTTTGGTGAACGGGTTGTTGCCTTCGCTGCCGTGGAG 163 Query 44156 GGCATTTTCTTTTCAG-GATCGTTT-GCGGCCATATTTTGGTTAAAGAAACGAGGTTTGA 44213 || || || |||||| | | |||| |||||||| || ||| | ||||| || || |||| Sbjct 162 GGTATCTT--TTTCAGCGGTAGTTTTGCGGCCATTTTCTGGCTTAAGAAGCGCGGCTTGA 105 Query 44214 TGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATT 44273 |||| || | ||||| || || ||| | || || || ||||| | || ||||| | Sbjct 104 TGCCAGGACTCACGTTCTCGAACGAGCTGATCTCGCGCGACGAAGGACTGCACTGCGACT 45 Query 44274 TTGCTTG 44280 |||| || Sbjct 44 TTGCCTG 38 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397208723743240