Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1636 307 9e-79 seq50967 122 7e-23 seq3519 98.7 8e-16 >seq1636 Length=7642 Score = 307 bits (340), Expect = 9e-79 Identities = 1077/1647 (65%), Gaps = 47/1647 (3%) Strand=Plus/Minus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || || || ||||| |||||||| || ||||||||||| ||||| || |||||||| Sbjct 5995 TTGTCCACCGTGAACTGAATGGCGTTTACCGCCGGCTTGGTACGCAAGTAGTACATGCCC 5936 Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGAT-GCTG-CACATTGTTTGGTAATTGG 130523 ||||| || || || || || || ||||| | || || ||| ||||| | Sbjct 5935 GTTTTAAGGCCCATCTTCCAGCCGTAGAAATGGATCGATGTCAGCTTGCCA--TAATTCG 5878 Query 130524 GTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAG 130583 ||| |||||| ||||||| ||| || |||||||| ||||| || || | ||| || | Sbjct 5877 GTTCAGCCACGTGAATGTTGAACGACTGTGATTGATCTATAAACGCTCCTCGGTCGGCGG 5818 Query 130584 CCATGTCGA-GCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATG 130642 |||| | || | | | ||||| | | |||||||| | || ||||| | || | ||| Sbjct 5817 CCATCTTGATGGAAGTTTTTACTGAT-ATCTCCCAGACCGTTTTGTAAATGTCACGAATC 5759 Query 130643 TGTTTGGGTATGCGCGCAATCGATTGAA-CGCTACCGTTGTTGGCTATAATTTCGTTGCG 130701 | || ||| || || ||| || | || | ||||||| || | |||| || | Sbjct 5758 TCTTGGGGAATTTCCGTAATTTTCTGGATCGAT-CCGTTGTGCGCCAGAATTCGGTGTCT 5700 Query 130702 CATACTTTTATCGT---ACAATCCAAGCT--GTACAAGATCTTTTACCAAATGATTATTA 130756 |||| | ||||| |||| ||| || || |||| || || | | ||| | ||| Sbjct 5699 CATA---TCATCGTCCCACAAGCCACACTCCGT-CAAG-TCCTTCAGGAGATGGTGATTC 5645 Query 130757 ATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCA 130816 | | |||||| || || | ||||||||| ||| |||| ||| ||| ||||||| Sbjct 5644 ACCACTTGAAATTCTCCCGACAGGACGCGCCTATTATAAACGTTCGATGTGTACGGTTCG 5585 Query 130817 AAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAAT 130876 ||||| || |||||||| || |||||||| || | || || ||||| ||||| | | Sbjct 5584 AAGGACTCATTGTTGCCCAAAATTTGTGCGGTTGAAGCCGTCGGCATCGGTGCCAACAGT 5525 Query 130877 AGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGA 130936 |||||||| |||| || ||| | | || || |||||||| |||| | ||| || Sbjct 5524 AGAGAATTGCGAATGCCATGCTTGGCAATCTTCTCTTTCAATTCCGCCCAGTTCCACAGG 5465 Query 130937 GAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTG 130996 |||||| | |||||||||||||| | || | || || || || | || || Sbjct 5464 TCCGTAGGTGTC---TTGTTCCACATATCGTACTGCAAGATACCCTTGCTTACCGGGCTA 5408 Query 130997 GATTCGAACGATTCGTAGATTCCTTCGACACG-AGCCAGGTCGTTGCTAGCTTCCAAAGC 131055 |||| ||| ||||| ||| || || | ||||| ||| |||||| ||||| || Sbjct 5407 CCTTCGTACGTCTCGTATGGTCCGTC-ACGGGCAGCCAACTCGCAGCTAGCCTCCAAGGC 5349 Query 131056 TCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTA 131115 ||||| || || ||||| ||||| | ||| | || || || | | |||||||| Sbjct 5348 ACCGTAGTAGATTGTTTCAAACATTTGCTGATTGAGTTTTTGGGCCTCCTCACTCTCGTA 5289 Query 131116 AGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCT 131175 || || ||| | ||||| || || || | ||| || | |||| || | || || Sbjct 5288 TGGGTATCGCATCAGGATAAACGCATCGGCCATACCTTGCACACCAATACCGATGGGCCT 5229 Query 131176 ATGTTTTAAATTACATTTACGCGAACATTCGG--TGGGATAAAGGTTAATGTCAATTATT 131233 || | || | ||||| | | ||| ||||| ||| ||||| || ||| Sbjct 5228 GTGGCGCATGTTCGAACGACGCG--CCTCCGGAACCGGATAGTAGTTGATGTCGATGATT 5171 Query 131234 TTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTG 131293 ||||| || || ||| ||| | | | ||| ||||| |||| | ||||| |||| Sbjct 5170 TTGTTCAAGTTTCGCGTTACGGTCTTAGCGACATCTTTCAGTTTGCCAAAATCGTACGTA 5111 Query 131294 CCAGTTTCGAGGTTTACAAA-TTGATTTACACATATTGACGCCAGATTACAAACTGCCGT 131352 | | | ||| | ||||| || || || | || || || ||||| || || || | Sbjct 5110 C--GATCCGA-TCTCACAAACATGTTTAACGC-GATCGATGCAAGATTGCACACGGCAAT 5055 Query 131353 TTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCC 131412 ||||| | | |||| || || || | ||| | || || |||||| ||||| Sbjct 5054 CTCGTCCTTTGAAGAGTACTCCACGATCTCCGTGCAAAGGTTTGAGCACTTTATTGTGCC 4995 Query 131413 CAAATTTTGTTGATTGCT-TTTAGCATTCACATGGTCCTTGTACATCATGTAGGGCGTGC 131471 || ||||| || ||||| ||| | | ||| |||||||||| |||||| ||| || Sbjct 4994 CACGTTTTGCTGGTTGCTCTTTCGGTTACAC-GCATCCTTGTACAGCATGTACGGCACGC 4936 Query 131472 CCGTTTCGACTTGAGTTTCAATAATGTATCGAA--AGAGTTTTCGAGCAGACAATTGATA 131529 | ||||| || || | |||||| ||| | || | || | | || | ||| Sbjct 4935 CGGTTTCCACCTGTGATTCAATTATG--GCAAACCACAGGTCCTGCGCCTTTACTTGGCG 4878 Query 131530 TTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTT--TCAAAGTTTTGGCCAAAC 131587 | | | || || ||||| |||||| |||| || || | || ||| || Sbjct 4877 AATAAAGCGACCTTCCTTCTCGTAGCCCTCGTAC--CGTTTCTCGAACTCTTCGCCCCAC 4820 Query 131588 GAACTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCA 131647 ||| ||| ||| || || || ||||| || ||||| |||| || Sbjct 4819 GAATCAGACAATCCGGGGCAATCATGCGGGCACATAAGACTCCACATTTCGTTAGCCTCC 4760 Query 131648 ACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTC 131707 ||||||||||| || |||||||| | ||| | || || |||| |||| || | | Sbjct 4759 ACTCGCTTCATGAATAAATCCGGTATCCAAAGGGCATAGAACATGTCTCGCGCACGTACC 4700 Query 131708 TCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGT 131767 || || | || | | ||||||| || | ||| || || | || | ||||| || Sbjct 4699 TCCTCCTTCCCTGTGTTCTTTTTCAGATCGAGAAACTCGAACACATCACCGTGCCACGGC 4640 Query 131768 TCCAAATACACTGCCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACC 131824 |||| || | ||| | ||| || |||||| || ||||||| || | || || Sbjct 4639 TCCAGGTAGATTGCAAATGCTCCGGGTCGCTTATTGCCTCCTTGATCGACGTACCGCGCC 4580 Query 131825 ATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTA 131884 |||| ||||| ||||| | ||| ||| ||||||| |||| | ||||||| |||| | Sbjct 4579 GTGTTATTGTACACGCGAAGCATCGGCACCAAACCATTGGAGATTCCATTTGTGCCCGCG 4520 Query 131885 ATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTA 131944 ||||| | || || || | ||| || ||||| || ||||| || ||| | | || Sbjct 4519 ATGTACGTTCCCTTCGCACGGATACAATGCACGTTCAGCCCAATGCCACCGGCTGACTTT 4460 Query 131945 GAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGG-CAAT 132003 || || || ||||| | | || || | |||||||| || | |||||| ||| || Sbjct 4459 GATATCAGGGCGCACTGTTTCAGCGTATCGTAGATACCGTCAATGCTGTCGTCGGACATC 4400 Query 132004 GTCGACTAAAAAGCAAGAGGACAACTG 132030 ||| || | ||||| || || | ||| Sbjct 4399 GTCAAC-AGGAAGCAGGAAGAAAGCTG 4374 >seq50967 Length=297 Score = 122 bits (134), Expect = 7e-23 Identities = 161/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| |||| ||||| |||||||| | || || ||||| || || ||||| || Sbjct 78 TGCCTCCTCGCAGACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCG 137 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| | ||||| ||||| || |||||| | || |||||||||||||| |||| Sbjct 138 ACAAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCG 197 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | || |||||||| ||||| || | | | || | || || | |||| || Sbjct 198 GGATTCCTTCTTTATCCTGAATCTTTGCCTTGACGTTCTCGATCGTATCGGATGGC-TCC 256 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAA 27238 || || ||||| || | |||||| ||||||||||| || || Sbjct 257 ACCTCGAGAGTGATCGTTTTGCCGGTCAGAGTTTTGACGAA 297 >seq3519 Length=1813 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| ||||| ||||| |||||||| | || || ||||| || || ||||| || | Sbjct 1619 CCTCCTCGCAAACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGAC 1678 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | ||||| ||||| || |||||| | || |||||||||||||| ||||| Sbjct 1679 AAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGGG 1738 Query 27141 ACACCCTCTTTATC 27154 | || || ||||| Sbjct 1739 ATTCCTTCCTTATC 1752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424670028125376