Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1636 140 4e-28 seq609 127 3e-24 seq3179 109 7e-19 >seq1636 Length=7642 Score = 140 bits (154), Expect = 4e-28 Identities = 454/695 (65%), Gaps = 15/695 (2%) Strand=Plus/Minus Query 110713 GTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGT 110772 ||| | |||||| ||||| ||| | ||||| || ||||| ||||||||||| || || || Sbjct 5603 GTTCGATGTGTACGGTTCGAAGGACTCATTGTTGCCCAAAATTTGTGCGGTTGAAGCCGT 5544 Query 110773 TGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAG 110832 ||||| ||||||| || ||| || |||| || | || || || || | Sbjct 5543 CGGCATCGGTGCCAACAGTAGAGAATTGCGAATGCCATGCTTGGCAATCTTCTCTTTCAA 5484 Query 110833 AACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTG-AAGCAC 110889 | |||||| | || | | | ||| || |||| |||| || |||| ||| Sbjct 5483 TTCCGCCCAGTTCCACAGGTCCG-TAGGTGTCTTGTTCC-ACATATCGTACTGCAAGATA 5426 Query 110890 CCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTT---GGGCTTCAGCCAA 110946 |||||| |||| | || || | || || || | || | |||| |||||| Sbjct 5425 CCCTTGCTTACCGGGCTA-CCTTCGTACGTCTCGTATGGTCCGTCACGGGC---AGCCAA 5370 Query 110947 TTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTC 111006 || ||||| ||||||| || ||| || || |||||||| || | ||| | | Sbjct 5369 CTCGCAGCTAGCCTCCAAGGCACCGTAGTAGATTGTTTCAAACATTTGCTGATTGAGTTT 5310 Query 111007 CTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTG 111066 | ||| || || || ||| ||| || || ||||| |||| || | |||||| Sbjct 5309 TTGGGCCTCCTCACTCTCGTATGGGTATCGCATCAGGATAAACGCATCGGCCATACCTTG 5250 Query 111067 AACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATA 111126 ||||| | ||| || || ||||| ||||| || || ||||| | ||| ||||| Sbjct 5249 CACACCAATACCGATGGGCCTGTGGCGCATGTTCGAACGACGCGCCTCCGGAACCGGATA 5190 Query 111127 AAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAG 111186 | || |||| |||| | ||| | ||| || || |||| | || || | || Sbjct 5189 GTAGTTGATGTCGATGATTTTGTTCAAGTTTCGCGTTACGGTCTTAGCGACATCTTTCAG 5130 Query 111187 TTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGC 111246 ||| || |||| | || ||| || || | ||| || | | ||||| ||||| Sbjct 5129 TTTGCCAAAATCGTACGTACGA-TCCGATC--TCACAAACATGTTTAACGCGATCGATGC 5073 Query 111247 CAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTT 111306 | |||||| || || |||| ||||| | |||||| | || || || || | ||| Sbjct 5072 AAGATTGCACACGGCAATCTCGTCCTTTGAAGAGTACTCCACGATCTCCGTGCAAAGGTT 5013 Query 111307 GGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTA 111366 || | ||| || || |||| || | ||||| ||||| ||| |||||||||||||| Sbjct 5012 TGAGCACTTTATTGTGCCCACGTTTTGCTGGTTGCTCTTTCGGTTACACGCATCCTTGTA 4953 Query 111367 GAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATT 111401 |||||||| ||| || || ||| |||||||| Sbjct 4952 CAGCATGTACGGCACGCCGGTTTCCACCTGTGATT 4918 >seq609 Length=4955 Score = 127 bits (140), Expect = 3e-24 Identities = 276/404 (68%), Gaps = 8/404 (2%) Strand=Plus/Plus Query 9155 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 9214 |||| |||| || ||||| | || ||| ||| |||||||| || | |||||||| Sbjct 1807 CCGCTTCTACCAGGCCTCGACGTCCGAGCTGTACGGTAAGGTGGCTGAAACGCCACAAAA 1866 Query 9215 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGT-TGCGGCACATT 9273 ||| ||||||| ||||| || || ||| || | | | ||| | | ||| | | | Sbjct 1867 CGAAAAGACACCGTTCTATCCGCGTTCGCCATATGCTTGCGCGAAGATGTACGG-ATACT 1925 Query 9274 GGCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCA 9333 || |||| | ||| ||||||||| | |||| |||| || ||| ||| || || |||| Sbjct 1926 GGATCGTGATAAACTACCGCGAGGCCTACGATATGTTCGCCTGCAACGGGATTCTATTCA 1985 Query 9334 ACCATGAATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTAC-CG-AGGGTAT 9391 |||| || |||||| | || || | | |||||||| ||||| || || ||| Sbjct 1986 ACCACGAGTCACCGCGCCGGGGAGAGAATTTTGTGACACGAAAGATCACTCGTTCGGTGG 2045 Query 9392 CAAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAG 9451 | | ||||| || | ||| | | ||||||| ||||| | || | || | Sbjct 2046 CGA--AAATCTCACTCGGCCAGCTGGAATGCCTTGAATTAGGTAATCTCGACTCAAAGCG 2103 Query 9452 AGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGA 9511 ||| ||||| ||||| || ||||| || ||||| |||||||| ||| | || || || || Sbjct 2104 AGACTGGGGCCACGCCAAAGACTACGTGGAAGCCATGTGGCTGATGATGCAGCAGGA-GA 2162 Query 9512 AGCC-GACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTG 9554 |||| || || | || | || || || ||||| ||||| ||| Sbjct 2163 AGCCGGAGGATTTCGTTATCGCCACCGGAGAGACACATTCGGTG 2206 >seq3179 Length=6791 Score = 109 bits (120), Expect = 7e-19 Identities = 271/408 (66%), Gaps = 10/408 (2%) Strand=Plus/Plus Query 181624 AACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAA 181683 |||| ||||||||||| || | |||||| | || | |||||||| | |||||| ||| Sbjct 3535 AACCAGTACCGATACCTTCCGCTCCATTTATCAGCAGCATTGGTATAATTGGCAAGTACC 3594 Query 181684 AGTCTGGTTCAATG----GAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCC 181739 | | ||||||||| || |||| |||| | || | || | || || || Sbjct 3595 AAACGGGTTCAATGCGCTGATTGTCC----TCGTTCTGATACTCCAGCAGTGGATCGTCG 3650 Query 181740 CGAGGATCAAAGATCTTGCGAGCCTCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGA 181799 | || | || || | ||| | | || | | |||||||| ||||||| | Sbjct 3651 AGCGGGTGGAAAATGTGGCGCGTCAGAGCGGACATCATCGTGAAGATGTACCTCGGGCTA 3710 Query 181800 GAAGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTA 181859 | |||||| || ||| | ||||| |||||||| ||||||| || | ||| || ||| Sbjct 3711 GCGCTGTCTTTTCCTCCCGTAAGACGTGTACCAAACTGACCACCCGGATAAAGCAGATTA 3770 Query 181860 ATGTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCA-AGGGACAC 181918 |||||||| || ||||| | ||||| || | ||| || ||| ||||||| Sbjct 3771 ATGTTGTTGCTTCCGACATAGTTCTGTGCCAAATTGATGATCGT-CGAGCACAGGGACAT 3829 Query 181919 TTCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCAT 181978 ||||||||||| || || ||| | ||||| || | | | || ||| |||||||||| Sbjct 3830 CTCACCGTGGTGATAGGCGGACATCTCCGCGACTGAACCGGACAGCTGAGCCACCTTCAC 3889 Query 181979 TTCATCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTG 182026 || ||| ||| | |||||| | | ||| ||||||| ||| Sbjct 3890 CTCGCGCTTGTCGTTACGCTTGAAGCACGTAAACAATACTTTCCGCTG 3937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627631252780800