Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq609 136 5e-27 seq1636 109 7e-19 seq3179 93.3 5e-14 >seq609 Length=4955 Score = 136 bits (150), Expect = 5e-27 Identities = 271/395 (69%), Gaps = 6/395 (2%) Strand=Plus/Plus Query 11817 TCGGAGATGTTTGGTAAAGTTAGGGAATCCCCACAAAATGAGGAGACGCCCTTCTATCCA 11876 || ||| ||| ||||| || ||| | |||||||| || |||| || |||||||| Sbjct 1829 TCCGAGCTGTACGGTAAGGTGGCTGAAACGCCACAAAACGAAAAGACACCGTTCTATCCG 1888 Query 11877 CGATCCGTCTATGGCGTCTCAAAGGT-TGCGGCACATTGGCTCGTGAAGAATTACCGAGA 11935 || || |||| | | ||| | | ||| | | ||| |||||| || ||||| || Sbjct 1889 CGTTCGCCATATGCTTGCGCGAAGATGTACGG-ATACTGGATCGTGATAAACTACCGCGA 1947 Query 11936 ATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAGTCACCCCGTCGTGG 11995 |||| | | | || || ||| || ||||| ||||||||||||||||| || || || Sbjct 1948 GGCCTACGATATGTTCGCCTGCAACGGGATTCTATTCAACCACGAGTCACCGCGCCGGGG 2007 Query 11996 CCCGGATTTCGTGACAAAGAAGATCAC-CGAT-GGTATCAAACAAATCGTGGCGGGTGAG 12053 | |||| |||||| |||||||| || | ||| | || |||| || || Sbjct 2008 AGAGAATTTTGTGACACGAAAGATCACTCGTTCGGTGGCGAA--AATCTCACTCGGCCAG 2065 Query 12054 AGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGACATGCCAAGGAC 12113 ||| | | ||||||| || || ||| || | || | |||||||| || ||||| ||| Sbjct 2066 CTGGAATGCCTTGAATTAGGTAATCTCGACTCAAAGCGAGACTGGGGCCACGCCAAAGAC 2125 Query 12114 TATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCG 12173 || || |||||||||||||| | | || || || || |||| || | || |||| Sbjct 2126 TACGTGGAAGCCATGTGGCTGATGATGCAGCAGGAGAAGCCGGAGGATTTCGTTATCGCC 2185 Query 12174 ACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGA 12208 || || |||||||| || || | || ||||| || Sbjct 2186 ACCGGAGAGACACATTCGGTGCGCGAATTCGTCGA 2220 >seq1636 Length=7642 Score = 109 bits (120), Expect = 7e-19 Identities = 471/735 (64%), Gaps = 15/735 (2%) Strand=Plus/Minus Query 118125 TCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAG 118184 |||| || |||||| | ||| || || ||| || |||| ||| ||| || ||| Sbjct 5665 TCCTTCAGGAGATGGTGATTCACCACTTGAAATTCTCCCGACAGGACGCGCCTATTATAA 5606 Query 118185 ATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCT 118244 | || | ||||| || || ||| |||||||||| ||||| ||||| || || || || Sbjct 5605 ACGTTCGATGTGTACGGTTCGAAGGACTCATTGTTGCCCAAAATTTGTGCGGTTGAAGCC 5546 Query 118245 GTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTG 118304 || ||||| ||||||| || || || || | || | | ||| || || Sbjct 5545 GTCGGCATCGGTGCCAACAGTAGAGAATTGCGAATGCCATGCTTGGCAATCTTCTCTTTC 5486 Query 118305 AGAGCGTCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGA 118362 | | |||||| | || | | | || || | ||||||||| |||| | || Sbjct 5485 AATTCCGCCCAGTTCCACAGGTCCG-TAGGTGTCTTGTT-CCACATATCGTACTGCAAGA 5428 Query 118363 TACC-TTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 118421 |||| ||| | ||| | || || | ||||| ||||| || ||| | ||||| Sbjct 5427 TACCCTTGCTTACCGGGCTA-CCTTCGTACGTCTCGTATGGTCCGTCACGGGCAGCCAAC 5369 Query 118422 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCC 118481 ||| |||| ||||| | ||| ||| || ||||||||||| || | ||| | | Sbjct 5368 TCGCAGCTAGCCTCCAAGGCACCGTAGTAGATTGTTTCAAACATTTGCTGATTGAGTTTT 5309 Query 118482 TTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGG 118541 | |||||| || || | | | ||| || ||||| |||| || | |||||| Sbjct 5308 TGGGCCTCCTCACTCTCGTATGGGTATCGCATCAGGATAAACGCATCGGCCATACCTTGC 5249 Query 118542 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGGGA 118598 ||||| | || || || | || | ||| || || || || |||| || ||| Sbjct 5248 ACACCAATACCGATGGGCCTGTGGCGCATGTTCGAACGACGCGC---CTCCGGAACCGGA 5192 Query 118599 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 118658 || | || | ||||| | | || | ||| || || ||| | || || | Sbjct 5191 TAGTAGTTGATGTCGATGATTTTGTTCAAGTTTCGCGTTACGGTCTTAGCGACATCTTTC 5132 Query 118659 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 118718 || || | |||| | | ||| || || | ||| || | | ||||| || Sbjct 5131 AGTTTGCCAAAATCGTACGTACGA-TCCGATC--TCACAAACATGTTTAACGCGATCGAT 5075 Query 118719 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAG 118778 || ||||| ||||| | |||| ||||| || |||||| | || |||||||| | | Sbjct 5074 GCAAGATTGCACACGGCAATCTCGTCCTTTGAAGAGTACTCCACGATCTCCGTGCAAAGG 5015 Query 118779 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 118838 ||||| | ||| || ||||||| ||| | || || |||| |||||||||||||||| Sbjct 5014 TTTGAGCACTTTATTGTGCCCACGTTTTGCTGGTTGCTCTTTCGGTTACACGCATCCTTG 4955 Query 118839 TAAAGCATGTATGGC 118853 || |||||||| ||| Sbjct 4954 TACAGCATGTACGGC 4940 >seq3179 Length=6791 Score = 93.3 bits (102), Expect = 5e-14 Identities = 185/270 (69%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 179038 GTGAAGATGTACCTCGTTTGAGACGC-ATCTTTGCCACCCATGAGACGCGTCCCAAATTG 179096 |||||||||||||||| || ||| ||||| || ||| | ||||| || ||||| || Sbjct 3690 GTGAAGATGTACCTCGGGCTAG-CGCTGTCTTTTCCTCCCGTAAGACGTGTACCAAACTG 3748 Query 179097 ACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGAC 179156 ||||| || | ||| ||||| || ||||| || | |||| | ||||| |||| Sbjct 3749 ACCACCCGGATAAAGCAGATTAATGTTGTTGCTTCCGACATAGTTCTGTGCCAAATTGAT 3808 Query 179157 AATCGTATCCGCG---AGGGAGACTTCACCGTGATGGTAAGCCGACTTGTCCGCCACATA 179213 ||||| || | ||||| | |||||||| || || || ||| | ||||| || | Sbjct 3809 GATCGT---CGAGCACAGGGACATCTCACCGTGGTGATAGGCGGACATCTCCGCGACTGA 3865 Query 179214 TGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACAT 179273 | | || ||| |||||||||| ||| |||| ||| | |||||||| | ||| Sbjct 3866 ACCGGACAGCTGAGCCACCTTCACCTCGCGCTTGTCGTTACGCTTGAAGCACGTAAACAA 3925 Query 179274 CACCTTTCTTTGTGAAGGCTTGAGGCCGTC 179303 || || | || ||||| | |||||| Sbjct 3926 TACTTTCCGCTGACCGGGCTTCAAGCCGTC 3955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618040576498880