Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq609 125 8e-24 seq38620 89.7 6e-13 >seq609 Length=4955 Score = 125 bits (138), Expect = 8e-24 Identities = 275/403 (68%), Gaps = 8/403 (2%) Strand=Plus/Plus Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291 ||| | ||||| ||||| || || ||| ||| ||||| || ||||| ||||||||| Sbjct 1808 CGCTTCTACCAGGCCTCGACGTCCGAGCTGTACGGTAAGGTGGCTGAAACGCCACAAAAC 1867 Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGT-TGCGGCACATTG 7350 || ||||||| ||||| || || ||| || | | | ||| | | ||| | | || Sbjct 1868 GAAAAGACACCGTTCTATCCGCGTTCGCCATATGCTTGCGCGAAGATGTACGG-ATACTG 1926 Query 7351 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 7410 | |||| | ||| ||||||||| | |||| |||| || ||| ||| || || ||||| Sbjct 1927 GATCGTGATAAACTACCGCGAGGCCTACGATATGTTCGCCTGCAACGGGATTCTATTCAA 1986 Query 7411 CCATGAATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTAC-CG-AGGGTATC 7468 ||| || |||||| | || || | | ||||| ||| ||||| || || ||| | Sbjct 1987 CCACGAGTCACCGCGCCGGGGAGAGAATTTTGTGACACGAAAGATCACTCGTTCGGTGGC 2046 Query 7469 AAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGA 7528 | ||||| || | ||| | | ||||||| ||||| | || | | || Sbjct 2047 GA--AAATCTCACTCGGCCAGCTGGAATGCCTTGAATTAGGTAATCTCGACTCAAAGCGA 2104 Query 7529 GATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAA 7588 || ||||| ||||| || ||||| || ||||| |||||||| ||| | || || || ||| Sbjct 2105 GACTGGGGCCACGCCAAAGACTACGTGGAAGCCATGTGGCTGATGATGCAGCAGGA-GAA 2163 Query 7589 GCC-GACGAATATGTAGTAGCAACGGGTGAGACCCATACAGTG 7630 ||| || || | || | || || || ||||| ||| | ||| Sbjct 2164 GCCGGAGGATTTCGTTATCGCCACCGGAGAGACACATTCGGTG 2206 >seq38620 Length=1898 Score = 89.7 bits (98), Expect = 6e-13 Identities = 167/243 (69%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 || ||| | || ||| | || | ||||| | ||||||| || ||||||||| |||| Sbjct 282 CTGTTTAACGCGATCGAGACGCTACCGTGCGTGAAAAAGAAGGCCGATTGGGCTCTGAAC 223 Query 94774 TGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAG 94833 ||| | | ||| | ||||| ||| || | | || || || || ||| Sbjct 222 TGGATCTCAAGCAAGAAGGCCAACTTTGGTGAACGGGTTGTTGCCTTCGCTGCCGTGGAG 163 Query 94834 GGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 94892 |||||||| ||| || | || ||| || |||| ||||| |||||||| || | || Sbjct 162 GGTATCTTTTTCAGCGG-TAGTTTTGCGGCCATTTTCTGGCTTAAGAAGCGCGGCTTGAT 104 Query 94893 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTT 94952 |||||| ||| ||||| |||||||| ||||| || ||||| ||||| ||| || || Sbjct 103 GCCAGGACTCACGTTCTCGAACGAGCTGATCTCGCGCGACGAAGGACTGCACTGCGACTT 44 Query 94953 TGC 94955 ||| Sbjct 43 TGC 41 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582888621283520