Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1636 150 2e-31 seq609 125 8e-24 seq3179 89.7 6e-13 >seq1636 Length=7642 Score = 150 bits (166), Expect = 2e-31 Identities = 295/427 (69%), Gaps = 8/427 (2%) Strand=Plus/Plus Query 53332 CTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGA 53391 |||||||||| || ||||| || ||| || ||||| |||||||| ||||| || | Sbjct 4385 CTGCTTCCTGTTGACGATGTCCGACGACAGCATTGACGGTATCTACGATACGCTGAAACA 4444 Query 53392 GTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGC-TCGAACGTCCGT 53449 ||| |||| || || |||| | ||||| || || | || ||| | | | ||||| Sbjct 4445 GTGCGCCCTGATATCAAAGTCAGCCGGTGGCATTGGGCTGAACGTGCATTGTA--TCCGT 4502 Query 53450 GCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTC 53509 ||||| || || ||| ||| || || || || || |||| | ||||| ||||| Sbjct 4503 GCGAAGGGAACGTACATCGCGGGCACAAATGGAATCTCCAATGGTTTGGTGCCGATGCTT 4562 Query 53510 CGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCG 53569 ||||| | ||| |||||||| ||||||||| | || || || ||||| || | Sbjct 4563 CGCGTGTACAATAACACGGCGCGGTACGTCGATCAAGGAGGCAATAAGCGACCCGGAGCA 4622 Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629 || || |||||||| ||||||||||||| || | | ||||||||||| ||| | Sbjct 4623 TTTGCAATCTACCTGGAGCCGTGGCACGGTGATGTGTTCGAGTTTCTCGATCTGAAAAAG 4682 Query 53630 AA-TCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGG 53687 || ||||| | || ||| | || ||| || ||| |||| || || ||||| |||| Sbjct 4683 AACACAGGG-AAGGAGGAGGTACG-TGCGCGAGACATGTTCTATGCCCTTTGGATACCGG 4740 Query 53688 ACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGT 53747 | | |||||| | |||||| |||| |||| || ||||||||| | || | Sbjct 4741 ATTTATTCATGAAGCGAGTGGAGGCTAACGAAATGTGGAGTCTTATGTGCCCGCATGATT 4800 Query 53748 GCCCCGG 53754 ||||||| Sbjct 4801 GCCCCGG 4807 >seq609 Length=4955 Score = 125 bits (138), Expect = 8e-24 Identities = 238/343 (69%), Gaps = 13/343 (4%) Strand=Plus/Minus Query 124509 TGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCCAC 124568 || ||||| || ||| | || |||||||| || || || |||||||| ||| |||||| Sbjct 2199 TGTGTCTCTCCGGTGGCGATAACGAAATCCTCCGGCTTCTCCTGCTGCATCATCAGCCAC 2140 Query 124569 ATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAGC 124628 ||||||| |||||||| | ||||| |||||||| ||||| | || || || || | Sbjct 2139 ATGGCTTCCACGTAGTCTTTGGCGTGGCCCCAGTCTCGCTTTGAGTCGAGATTACCTAAT 2080 Query 124629 TC----GATT--GGCTTGGCCGTCT-TGTTCCACTCCGCCAAACCCAGTGTAATCTTGCG 124681 || ||| || |||||| | | | | || || ||| | || ||||| || Sbjct 2079 TCAAGGCATTCCAGC-TGGCCGAGTGAGATTTTCGCCACCGAAC---GAGTGATCTTTCG 2024 Query 124682 CGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACGC 124741 |||||||| | || || ||| |||||||||||||| ||||| || | || || Sbjct 2023 TGTCACAAAATTCTCTCCCCGGCGCGGTGACTCGTGGTTGAATAGAATCCCGTTGCAGGC 1964 Query 124742 AAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGCTT-GGACA 124800 ||||| |||| | ||||||||||||| || ||||| || || | | ||| | || Sbjct 1963 GAACATATCGTAGGCCTCGCGGTAGTTTATCACGATCCAGTATCCGTACATCTTCGCGCA 1904 Query 124801 CGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTG 124843 | |||| || || || ||||| || || ||||| ||||| Sbjct 1903 AG-CATATGGCGAACGCGGATAGAACGGTGTCTTTTCGTTTTG 1862 >seq3179 Length=6791 Score = 89.7 bits (98), Expect = 6e-13 Identities = 192/287 (67%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| | | ||| || || || || || | |||||| ||||| || || Sbjct 3690 GTGAAGATGTACCTCGGGCTAGCGCTGTCTTTTCCTCCCGTAAGACGTGTACCAAACTGA 3749 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 |||| ||| | | || || | ||||||| || ||| |||| || ||||| |||| Sbjct 3750 CCACCCGGATAAAGCAGATTAATGTTGTTGCTTCCGACATAGTTCTGTGCCAAATTGATG 3809 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 ||||| ||| | |||||| |||||||| || | | |||||| || | || Sbjct 3810 ATCGTCGAGCACAGGGACATCTCACCGTGGTGATAGGCGGACATCTCCGCGACTGAACCG 3869 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 | ||||||||||||||||| || | | ||| ||||| ||| | | | | || Sbjct 3870 GACAGCTGAGCCACCTTCACCTCGCGCTTGTCGTTACGCTTGAAGCACGTAAACAATACT 3929 Query 117545 TTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACG 117591 || ||||||| ||||||| || || ||| |||||||| || Sbjct 3930 TTCCGCTGACCGGGCTTCAAGCCGTCTAACACACACGGGATCGATCG 3976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546866821470400