Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq20890 91.5 9e-14 seq50967 87.8 1e-12 seq3519 84.2 1e-11 >seq20890 Length=2679 Score = 91.5 bits (100), Expect = 9e-14 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | || || | ||||| ||| || || |||||| |||||||| ||||| | Sbjct 1408 CGCCACCACGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTGTAATCAG 1467 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | || || || |||| || || || || ||||| || || | |||||| || || || | Sbjct 1468 ACAGCGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGG 1527 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| |||| || | ||| || | || || || | || Sbjct 1528 GGATACCCTCCTTGTCCTGGATC-TTGGCTTTCACATTCTCGATCGTATCCGAGGGTTCA 1586 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || | ||| || || ||||| || | |||||||| || |||||||| ||| Sbjct 1587 ACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCACGAAGATCTGCATCTTG 1640 >seq50967 Length=297 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| ||||||||||||||||| ||||| || || || ||||| ||||| || Sbjct 79 GCCTCCTCGCAGACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGA 138 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || | ||||| || || || ||||| || || | ||||||||| || ||||| Sbjct 139 CAAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGG 198 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||| || || || ||| |||| || ||| | || || || ||||| Sbjct 199 GATTCCTTCTTTATC-CTGAATCTTTGCCTTGACGTTCTCGATCGTATCGGATGGCTCCA 257 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAA 34697 | || | || |||||||| ||||| | ||||| || || Sbjct 258 CCTCGAGAGTGATCGTTTTGCCGGTCAGAGTTTTGACGAA 297 >seq3519 Length=1813 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| | ||||||||||||||| ||||| || || || ||||| ||||| || Sbjct 1619 CCTCCTCGCAAACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGAC 1678 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| || || || ||||| || || | ||||||||| || ||||| Sbjct 1679 AAGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGGG 1738 Query 34600 ACTCCCTCCTTGTC 34613 | ||| ||||| || Sbjct 1739 ATTCCTTCCTTATC 1752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314533791766184