Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2949 203 3e-47 seq50967 165 7e-36 seq42053 159 3e-34 seq20890 141 8e-29 seq3519 134 1e-26 seq20012 120 3e-22 seq41025 113 4e-20 >seq2949 Length=10021 Score = 203 bits (224), Expect = 3e-47 Identities = 325/464 (70%), Gaps = 16/464 (3%) Strand=Plus/Minus Query 135308 GTGCGCCGCGAATTGGCGGACAATTTTTGTTATTATAACAAACATTATGATTGCATAGAA 135367 ||||| |||||| || ||||||| ||||||| |||||||| | |||||| | | || Sbjct 9386 GTGCGGCGCGAACTGTCGGACAACTTTTGTTTCCATAACAAAAACTATGATAACCTTAAA 9327 Query 135368 GGTGCTCCGGCATGGGCGCAACAAACTTTGCACGCTCACGCCTCTGATCGCAGAGACTTT 135427 || || | ||||| || | || ||| ||| ||| | ||| ||| | | Sbjct 9326 GGAGCCTACGAGTGGGCTCAGAAGACGTTGAACGACCACCGCAAGGATAAACGAGTATAT 9267 Query 135428 TGTTACACGCG---CGAGC---AATGGGACCAAGCGTTGACGCATGACCCGTTGTGGAAC 135481 || |||||||| ||||| || || | || || || ||| ||||||||| Sbjct 9266 TGCTACACGCGGGACGAGCTTGAAACGGCCAAA------ACACACGACGACTTGTGGAAC 9213 Query 135482 GCGGCACAACGGCAGCT--TAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATGTATT 135539 |||| || | ||| | ||| || ||||||||||||||| || |||| ||||| | Sbjct 9212 TCGGCTCAGCTACAGATGGTAAAGGA--AGGCAAAATGCACGGCTTCCTGCGAATGTACT 9155 Query 135540 GGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCAATAT 135599 |||| || || || | |||||| | | |||||| ||||||||| || || || | Sbjct 9154 GGGCGAAGAAAATCCTCGAATGGACCAAAACGCCTGAAGAGGCGCTCGAATCAGCCATCT 9095 Query 135600 TTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTTGTATGT 135659 | | || || |||||| | |||||||||||| |||| || ||||| || ||||||| Sbjct 9094 ATCTGAACGACCGGTACAGTCTCGATGGACGCGATCCAAACGGGTACGTTGGCTGTATGT 9035 Query 135660 GGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCAAGATTC 135719 |||| || ||| | || ||||| || ||||| |||||| | | ||||| ||||||| Sbjct 9034 GGTCGATCGCGGGTATCCATGATCAGGGCTGGAAAGAGCGCGATATATTTGGAAAGATTC 8975 Query 135720 GCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAAT 135763 | || |||||||| || || || | ||||||||| ||||| ||| Sbjct 8974 GATACATGAACTACGAAGGCTGCAAAAGAAAATTCAATGTTAAT 8931 >seq50967 Length=297 Score = 165 bits (182), Expect = 7e-36 Identities = 169/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || || ||||||||||||||||| | || ||||| || ||||| || ||||| |||| Sbjct 297 TTCGTCAAAACTCTGACCGGCAAAACGATCACTCTCGAGGTGGAGCCATCCGATACGATC 238 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 |||| ||||| ||| ||||| || |||||||| || || || |||||||||||| | Sbjct 237 GAGAACGTCAAGGCAAAGATTCAGGATAAAGAAGGAATCCCGCCAGATCAACAGCGTCTT 178 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | |||||| || || ||||||| || ||| | || ||||||||||| || || Sbjct 177 ATCTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACCTTGTCGGATTACAACATCCAGAAA 118 Query 27177 GAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| | |||||||| |||||| |||| || ||||| Sbjct 117 GAATCGACTCTGCATTTGGTGTTGCGTCTGCGAGGAGGCAT 77 >seq42053 Length=1259 Score = 159 bits (176), Expect = 3e-34 Identities = 184/247 (74%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 26971 TTTTTAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTC 27030 ||||| ||||||| |||||||| || || || |||||||| |||||| | || |||| Sbjct 994 TTTTTCATTTATAGT--ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTC 1051 Query 27031 TTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAG 27090 | || || || || || || | || |||| || ||| || || || ||||| |||| Sbjct 1052 TGGAGGTCGAGCCTTCGGATACTATCGAGAATGTGAAAGCTAAGATCCAGGACAAGGAAG 1111 Query 27091 GCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGA 27150 |||| || || ||||| |||||||| || | ||| ||||| || | || ||| | | Sbjct 1112 GCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGACGCA 1171 Query 27151 CCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGG 27210 || | ||||| ||||||||||| |||||||||||||| || ||||| | ||| |||| | Sbjct 1172 CCCTGTCCGACTACAACATTCAGAAGGAGTCGACCTTGCACTTGGTCCTTCGTCTGCGTG 1231 Query 27211 GTGGCAT 27217 |||| || Sbjct 1232 GTGGTAT 1238 >seq20890 Length=2679 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | ||||| ||||| || ||||| || Sbjct 1636 ATGCAGATCTTCGTGAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTTGAACCCTCG 1577 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || ||| || || || ||||| || || || || || ||||| Sbjct 1576 GATACGATCGAGAATGTGAAAGCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGATCAG 1517 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| ||| | || | || ||||||||| Sbjct 1516 CAGCGTCTGATTTTCGCCGGCAAGCAGCTGGAGGACGGACGCACGCTGTCTGATTACAAC 1457 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| |||||||||||| | ||| |||| | || |||| |||||| Sbjct 1456 ATTCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGTGGTGGC 1409 >seq3519 Length=1813 Score = 134 bits (148), Expect = 1e-26 Identities = 153/204 (75%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 || ||||| || ||||| || ||||| |||| |||| ||||| ||| ||||| || Sbjct 1809 ATCACTCTCGAGGTGGAGCCATCCGATACGATCGAGAACGTCAAGGCAAAGATTCAGGAT 1750 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || ||||| || || || |||||||||||| | || | |||||| || || ||||||| Sbjct 1749 AAGGAAGGAATCCCGCCAGATCAACAGCGTCTTATCTTCGCCGGAAAGCAGCTGGAAGAT 1690 Query 27144 AGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 || ||| | || ||||||||||| || || || ||||| | |||||||| |||||| Sbjct 1689 GGTCGCACCTTGTCGGATTACAACATCCAGAAAGAATCGACTCTGCATTTGGTGTTGCGT 1630 Query 27204 TTGCGGGGTGGCATAACAA-ACAC 27226 ||||| || || || | || |||| Sbjct 1629 TTGCGAGGAGGAATCAGAATACAC 1606 >seq20012 Length=3655 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | || ||||| || || || || || Sbjct 2712 ATGCAGATTTTCGTCAAAACGCTCACTGGGAAGACCATAACTCTCGAGGTCGAGCCCTCT 2653 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||| || || || |||||||| || ||||| ||||| Sbjct 2652 GACACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAAGAAGGTATTCCACCAGATCAG 2593 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 |||||| | || | |||||||||||| |||| || | ||| |||| || || || || Sbjct 2592 CAGCGTCTGATCTTCGCCGGCAAACAGCTGGAGGA-TGGTCGTACGTTGTCTGACTATAA 2534 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| ||||| || ||| | || |||| ||||| | || ||||| Sbjct 2533 TATTCAGAAGGAATCTACCCTTCACCTGGTGTTGCGACTTCGTGGTGG 2486 >seq41025 Length=2165 Score = 113 bits (124), Expect = 4e-20 Identities = 101/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || |||||||||||||| ||| | || ||||| || |||||||| || Sbjct 136 CATGCAAATCTTCGTCAAAACTCTGACCGGAAAGACGATCACTCTCGAGGTGGAACCATC 77 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| |||| ||||| ||| ||||| || || ||||| || ||||| ||||| Sbjct 76 CGATACGATCGAGAACGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCAGATCA 17 Query 27107 ACAGCGT 27113 ||||||| Sbjct 16 ACAGCGT 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434640878568960