Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq20890 89.7 4e-13 seq50967 84.2 2e-11 >seq20890 Length=2679 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| ||| || || ||| || || || || ||||| | || || ||| | Sbjct 1421 GCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGACAGCGTGCGTCC 1480 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || ||||||||||| || | ||| | | ||| || Sbjct 1481 GTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGGATACCCTCCTT 1540 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| || ||| | || | | |||||| | || || || | || || Sbjct 1541 GTCCTGGATCTTGGCTTTCACATTCTCGATCGTATCCGAGGGTTCAACCTCAAGGGTAAT 1600 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | || ||||| || ||||| || ||||| |||||||| Sbjct 1601 GGTCTTACCCGTGAGGGTTTTCACGAAGATCTGCATCTT 1639 >seq50967 Length=297 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAAT- 39112 || |||||||| | || ||||||||||| || || ||||| || || || |||| Sbjct 76 CATGCCTCCTCGCAGACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATC 135 Query 39113 CGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGG 39172 || |||| || || | || || ||||| || || || || ||||||||||| || || | Sbjct 136 CGACAAG-GTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTG 194 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGAC 39231 || | | ||||| ||| ||| | | || |||| || | | ||||||| | | Sbjct 195 GCGGGATTCCTTCTTTATCC-TGAATCTTTGCCTTGACGTTCTCGATCGTATCGGATGGC 253 Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275 ||||| || | ||||| |||| || ||||| ||||| || || Sbjct 254 TCCACCTCGAGAGTGATCGTTTTGCCGGTCAGAGTTTTGACGAA 297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429278359278824