Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq50967 123 2e-23 seq20890 122 6e-23 seq3519 107 1e-18 seq20012 105 5e-18 >seq50967 Length=297 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679 ||||| ||||| || || || ||||||||||||||||| || || | | || || | Sbjct 297 TTCGTCAAAACTCTGACCGGCAAAACGATCACTCTCGAGGTGGAGCCATCCGATACGATC 238 Query 23680 GAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTA 23739 || | | || ||| ||| || |||||||| | |||||||||||||||||| | Sbjct 237 GAGAACGTCAAGGCAAAGATTCAGGATAAAGAAGGAATCCCGCCAGATCAACAGCGTCTT 178 Query 23740 ATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAA 23799 || || ||||| || || |||||||| | ||||| || ||||||||||| || ||| Sbjct 177 ATCTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACCTTGTCGGATTACAACATCCAGAAA 118 Query 23800 GAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || | ||||| || || | |||||||||| Sbjct 117 GAATCGACTCTGCATTTGGTGTTGCGTCTGCGAGGAGG 80 >seq20890 Length=2679 Score = 122 bits (134), Expect = 6e-23 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||||||||| || || || || || || ||||| || Sbjct 1639 AAGATGCAGATCTTCGTGAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTTGAACCC 1580 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| || | || ||| | ||| | || | | ||||| || ||| | || ||||| Sbjct 1579 TCGGATACGATCGAGAATGTGAAAGCCAAGA-TCCAGGACAAGGAGGGTATCCCCCCAGA 1521 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || |||||||| || ||||| |||| |||||| | ||||| Sbjct 1520 TCAGCAGCGTCTGATTTTCGCCGGCAAGCAGCTGGAGGACGGACGCACGCTGTCTGATTA 1461 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || ||||| || Sbjct 1460 CAACATTCAGAAGGAGTCGAC 1440 >seq3519 Length=1813 Score = 107 bits (118), Expect = 1e-18 Identities = 145/201 (72%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 23643 AACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGC 23702 ||||||||||||||| || || | | || || | || | | || ||| ||| Sbjct 1813 AACGATCACTCTCGAGGTGGAGCCATCCGATACGATCGAGAACGTCAAGGCAAAGATTCA 1754 Query 23703 TGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGA 23762 || || ||||| | |||||||||||||||||| | || || ||||| || || ||||| Sbjct 1753 GGATAAGGAAGGAATCCCGCCAGATCAACAGCGTCTTATCTTCGCCGGAAAGCAGCTGGA 1694 Query 23763 AGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| | ||||| || ||||||||||| || ||||| || || | ||||| || || Sbjct 1693 AGATGGTCGCACCTTGTCGGATTACAACATCCAGAAAGAATCGACTCTGCATTTGGTGTT 1634 Query 23823 AAGGTTGCGAGGAGG-ATCAG 23842 | ||||||||||| ||||| Sbjct 1633 GCGTTTGCGAGGAGGAATCAG 1613 >seq20012 Length=3655 Score = 105 bits (116), Expect = 5e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| ||||| ||||| || || || || |||||||| || || || Sbjct 2715 AAGATGCAGATTTTCGTCAAAACGCTCACTGGGAAGACCATAACTCTCGAGGTCGAGCCC 2656 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | |||| | || ||| || || ||||||||| | || |||||| Sbjct 2655 TCTGACACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAAGAAGGTATTCCACCAGAT 2596 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA 23765 || |||||| | || || ||||||||||| ||||| || Sbjct 2595 CAGCAGCGTCTGATCTTCGCCGGCAAACAGCTGGAGGA 2558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337799308172384