Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq50967 143 6e-29 seq20012 140 8e-28 seq3519 127 5e-24 seq42053 113 1e-19 seq114 107 5e-18 seq41025 96.9 8e-15 >seq50967 Length=297 Score = 143 bits (158), Expect = 6e-29 Identities = 148/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||| |||||||| |||| |||||||| | ||| || | |||||||| |||||| Sbjct 104 TGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGACAAGGTGCGACCATCTTCCAGCTGC 163 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || ||||||||||| || ||||| || ||||| || ||||| || || || |||||| Sbjct 164 TTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGGGATTCCTTCTTTATCCTGAATCTTT 223 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| || ||||| || || || | ||||| || | |||||||| ||||| ||| Sbjct 224 GCCTTGACGTTCTCGATCGTATCGGATGGCTCCACCTCGAGAGTGATCGTTTTGCCGGTC 283 Query 225691 AAAGTTTTTATGAA 225704 | |||||| | ||| Sbjct 284 AGAGTTTTGACGAA 297 >seq20012 Length=3655 Score = 140 bits (154), Expect = 8e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || || ||||| || || ||||| || || | ||| || || | ||| || Sbjct 2491 ACGAAGTCGCAACACCAGGTGAAGGGTAGATTCCTTCTGAATATTATAGTCAGACAACGT 2550 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || ||||| || || |||||||| || || || || || || |||||||| Sbjct 2551 ACGACCATCCTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATACC 2610 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| || || ||||||||| ||||||| |||||||||||| |||| || || || | Sbjct 2611 TTCTTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTGTCAGAGGGCTCGACCTCGAG 2670 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || ||||| || || | ||||| | ||| | ||||| || Sbjct 2671 AGTTATGGTCTTCCCAGTGAGCGTTTTGACGAAAATCTGCATCTT 2715 >seq3519 Length=1813 Score = 127 bits (140), Expect = 5e-24 Identities = 130/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||| |||||||| |||| |||||||| | ||| || | |||||||| |||||| Sbjct 1643 TGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGACAAGGTGCGACCATCTTCCAGCTGC 1702 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || ||||||||||| || ||||| || ||||| || |||||||| || || |||||| Sbjct 1703 TTTCCGGCGAAGATAAGACGCTGTTGATCTGGCGGGATTCCTTCCTTATCCTGAATCTTT 1762 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||| || ||||| || || || | ||||| || | |||||||| Sbjct 1763 GCCTTGACGTTCTCGATCGTATCGGATGGCTCCACCTCGAGAGTGATCGT 1812 >seq42053 Length=1259 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| | || || || || || | ||||| |||| || || | || || Sbjct 1220 AGGACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGTCCGTCC 1161 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| | || || || || || ||||| ||||||||||| Sbjct 1160 TCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 1101 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||| || || || | || || || | ||||| ||| Sbjct 1100 TGGATCTTAGCTTTCACATTCTCGATAGTATCCGAAGGCTCGACCTCCAGAGTGATGGTC 1041 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| ||| || | ||| | ||||| Sbjct 1040 TTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1009 >seq114 Length=15746 Score = 107 bits (118), Expect = 5e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || |||||| | || || ||||| ||| |||| ||||| ||| | || || Sbjct 12930 CAAATTTATAATGTTATTGTAACAGCTCATGCATTTATTATAATTTTTTTTATAGTAATA 12989 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||||| || ||| | || | || || || ||| Sbjct 12990 CCTATTATAATTGGAGGATTTGGAAATTGATTAGTACCTCTTATATTAGGAGCCCCCGAT 13049 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 || || || || | | || |||||||| |||||| || |||| ||||| ||| Sbjct 13050 ATAGCATTCCCTCGAATAAATAATATAAGATTTTGAATATTACCTCCTTCATTA 13103 Score = 98.7 bits (108), Expect = 2e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||||||||||||||| |||||||||||||| | || || || || || || | Sbjct 13502 TTCAGGATGACCAAAAAATCAAAATAAATGTTGATATAAAATTGGGTCTCCCCCACCAGC 13443 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||||||||||| |||||| ||||||| ||| ||||| Sbjct 13442 AGGATCAAAAAATGAAGTATTTAAATTTCGATCTGTTAA 13404 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 371401 ATATTAAATATCGTAGTAATAAAGTTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGA 371460 ||||| | || ||||||||||| || | ||| |||| || |||||| || ||||| | | Sbjct 13288 ATATTGATTACAGTAGTAATAAAATTAACAGCTCCTAAAATAGAAGAAATTCCTGCTAAA 13229 Query 371461 TGTAAACTAAATATTGCTAAATCGACGGAACCGCCGGAGTGAGCTACAATAGAACTTAAC 371520 |||||| ||| || |||||||| || ||| | || | |||||| | |||| ||| Sbjct 13228 TGTAAAGAAAAAATAGCTAAATCTACAGAAGCTCCTGCGTGAGCAATTCCAGAAGATAAA 13169 Query 371521 GGCGGGTAAACTGTTCAGCCGGTTC 371545 || || ||||| ||||| || |||| Sbjct 13168 GGAGGATAAACAGTTCATCCAGTTC 13144 >seq41025 Length=2165 Score = 96.9 bits (106), Expect = 8e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 225579 GAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCAC 225638 ||||||||| || ||||| || || || || |||||||| || || |||||| ||| || Sbjct 1 GAAGATAAGACGCTGTTGATCTGGTGGGATTCCTTCCTTATCCTGAATCTTTGCCTTGAC 60 Query 225639 AGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| || || || | |||||| || | ||||||||||| || |||| |||||| Sbjct 61 GTTCTCGATCGTATCGGATGGTTCCACCTCGAGAGTGATCGTCTTTCCGGTCAGAGTTTT 120 Query 225699 TATGAACACTTGCATTTT 225716 | ||| | |||||| || Sbjct 121 GACGAAGATTTGCATGTT 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191751221987312