Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq50967 125 2e-23 seq3519 105 2e-17 seq20890 104 5e-17 seq42053 95.1 3e-14 seq20012 89.7 1e-12 >seq50967 Length=297 Score = 125 bits (138), Expect = 2e-23 Identities = 147/197 (75%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--G 151958 ||| ||||| || ||||| |||||||||||||| | || || | |||||||| || | Sbjct 103 ATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGACAAGGTGCGACCATCTTCCAGCTG 162 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 |||| |||||||||||||| | ||| || || | || ||||||||| || || ||||| Sbjct 163 CTTT--CCGGCGAAGATAAGACGCTGTTGATCTGGCGGGATTCCTTCTTTATCCTGAATC 220 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 ||| ||||| |||| | | || || ||| || || ||||| || |||||||| Sbjct 221 TTTGCCTTGACGTTCTCGATCGTATCGGATGGCTCCACCTCGAGAGTGATCGTTTTGCCG 280 Query 152079 GTGAGAGTCTTCACGAA 152095 || ||||| || ||||| Sbjct 281 GTCAGAGTTTTGACGAA 297 >seq3519 Length=1813 Score = 105 bits (116), Expect = 2e-17 Identities = 129/174 (74%), Gaps = 4/174 (2%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--G 151958 ||| ||||| || ||||| |||||||||||||| | || || | |||||||| || | Sbjct 1642 ATGCAGAGTCGATTCTTTCTGGATGTTGTAATCCGACAAGGTGCGACCATCTTCCAGCTG 1701 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 |||| |||||||||||||| | ||| || || | || |||||||||||| || ||||| Sbjct 1702 CTTT--CCGGCGAAGATAAGACGCTGTTGATCTGGCGGGATTCCTTCCTTATCCTGAATC 1759 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||| ||||| |||| | | || || ||| || || ||||| || ||| Sbjct 1760 TTTGCCTTGACGTTCTCGATCGTATCGGATGGCTCCACCTCGAGAGTGATCGTT 1813 >seq20890 Length=2679 Score = 104 bits (114), Expect = 5e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || |||||||| || ||||| || || ||||||||||| | | || | || || Sbjct 1425 AGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGACAGCGTGCGTCCGTCC 1484 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || |||||||| || || | |||||| || | | ||| || ||||| || Sbjct 1485 TCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCC 1544 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||| ||| |||| | | || || || || ||||| ||||| || Sbjct 1545 TGGATCTTGGCTTTCACATTCTCGATCGTATCCGAGGGTTCAACCTCAAGGGTAATGGTC 1604 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || |||||||| || |||||||||| |||||| || Sbjct 1605 TTACCCGTGAGGGTTTTCACGAAGATCTGCATCTT 1639 >seq42053 Length=1259 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||| || || |||||||| |||| | || | || || || || || || Sbjct 1205 GTCGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCAAGCTGCTTGCCA 1146 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 |||||||| | | |||||| || | | || |||||||| || || || || ||| Sbjct 1145 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCTTTC 1086 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| |||| | | || ||| ||| || || ||||| || || ||||| || |||||| Sbjct 1085 ACATTCTCGATAGTATCCGAAGGCTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTC 1026 Query 152088 TTCACGAAGACCTGCAT 152104 |||||||||| |||||| Sbjct 1025 TTCACGAAGATCTGCAT 1009 >seq20012 Length=3655 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || || ||||| ||||| || || || || || || || | || || | ||||| || Sbjct 2504 ACCAGGTGAAGGGTAGATTCCTTCTGAATATTATAGTCAGACAACGTACGACCATCCTCC 2563 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || ||| ||||||||||| || | |||||| || | | || ||||| || || || Sbjct 2564 AGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTATCCTGG 2623 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || ||| || ||| | || | | |||| || ||| || || ||||| || || || Sbjct 2624 ATCTTTGCCTTCACATTTTCGATGGTGTCAGAGGGCTCGACCTCGAGAGTTATGGTCTTC 2683 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || ||||| | |||||| || Sbjct 2684 CCAGTGAGCGTTTTGACGAAAATCTGCATCTT 2715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153066140621208