Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq20890 150 1e-31 seq42053 127 1e-24 seq20012 118 8e-22 seq50967 107 1e-18 seq3519 96.9 2e-15 seq41025 91.5 1e-13 >seq20890 Length=2679 Score = 150 bits (166), Expect = 1e-31 Identities = 165/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||||| ||||| || |||||| || ||||||||||| | || ||| |||| || Sbjct 1427 CACCAGATGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGACAGCGTGCGTCCGTCCTC 1486 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| || |||| |||||||||||||| || | ||| ||||| ||| Sbjct 1487 CAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCCTG 1546 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| |||| | ||| | || || || | || ||| ||||| | ||||| |||| Sbjct 1547 GATCTT-GGCTTTCACATTCTCGATCGTATCCGAGGGTTCAACCTCAAGGGTAATGGTCT 1605 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTG 44343 | ||||||||||| ||||||||||| ||||| |||| Sbjct 1606 TACCCGTGAGGGTTTTCACGAAGATCTGCATCTTGTG 1642 >seq42053 Length=1259 Score = 127 bits (140), Expect = 1e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| || |||||||| |||| || ||| |||| || |||||||| || || || Sbjct 1200 CTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCAAGCTGCTTGCCAGCGAA 1141 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||||||||||||||||| || | |||||||| ||| ||||| |||| | | Sbjct 1140 GATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTT-AGCTTTCACAT 1082 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | || || || | | || ||||||| || || ||||| || || || ||||||| Sbjct 1081 TCTCGATAGTATCCGAAGGCTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCA 1022 Query 44325 CGAAGATTTGCATGATGTGAATGAAAA 44351 ||||||| ||||| | | |||||||| Sbjct 1021 CGAAGATCTGCATACTATAAATGAAAA 995 >seq20012 Length=3655 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||| ||||||||||||||| || ||||| || || || || || | | || Sbjct 2495 AGTCGCAACACCAGGTGAAGGGTAGATTCCTTCTGAATATTATAGTCAGACAACGTACGA 2554 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || |||||||| || ||||| ||||||| |||||||||||||| || | |||||| Sbjct 2555 CCATCCTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGAATACCTTCT 2614 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||||| || | |||||||| | || || ||||| | || Sbjct 2615 TTATCCTGGATCTTTGCCTTCACATTTTCGATGGTGTCAGAGGGCTCGACCTCGAGAGTT 2674 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| || ||||| || || ||||| || ||||| Sbjct 2675 ATGGTCTTCCCAGTGAGCGTTTTGACGAAAATCTGCAT 2712 >seq50967 Length=297 Score = 107 bits (118), Expect = 1e-18 Identities = 163/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||| ||| | |||||||| || || || || || ||||||||||| Sbjct 73 TTGCATGCCTCCTCGCAGACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTA 132 Query 44164 AT-CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 || || | || | ||| | || ||||||||||| ||||| ||||| | |||||| |||| Sbjct 133 ATCCGACAAGGT-GCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGAT 191 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCG 44281 ||| || | ||||| || ||| ||||| ||| | | |||| | || || |||| Sbjct 192 CTGGCGGGATTCCTTCTTTATCCTGAATCTT-TGCCTTGACGTTCTCGATCGTATCGGAT 250 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAA 44328 | |||||||| | || ||||| || || || || || || ||||| Sbjct 251 GGCTCCACCTCGAGAGTGATCGTTTTGCCGGTCAGAGTTTTGACGAA 297 >seq3519 Length=1813 Score = 96.9 bits (106), Expect = 2e-15 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAAT-C 44166 ||||| |||| || | |||||||| || || || || || ||||||||||||| | Sbjct 1616 ATTCCTCCTCGCAAACGCAACACCAAATGCAGAGTCGATTCTTTCTGGATGTTGTAATCC 1675 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | || | ||| | || ||||||||||| ||||| ||||| | |||||| ||||||| Sbjct 1676 GACAAGGT-GCGACCATCTTCCAGCTGCTTTCCGGCGAAGATAAGACGCTGTTGATCTGG 1734 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| ||| | | |||| | || || |||| | | Sbjct 1735 CGGGATTCCTTCCTTATCCTGAATCTT-TGCCTTGACGTTCTCGATCGTATCGGATGGCT 1793 Query 44286 CCACCTCCACCGTAATCGT 44304 ||||||| | || ||||| Sbjct 1794 CCACCTCGAGAGTGATCGT 1812 >seq41025 Length=2165 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 44204 AAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAAT 44263 ||||| | |||||| ||||||| || | |||||||| ||| ||||| ||| | | Sbjct 2 AAGATAAGACGCTGTTGATCTGGTGGGATTCCTTCCTTATCCTGAATCTT-TGCCTTGAC 60 Query 44264 GTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTT 44322 |||| | || || |||| | ||||||||| | || ||||||||||| || || || || Sbjct 61 GTTCTCGATCGTATCGGATGGTTCCACCTCGAGAGTGATCGTCTTTCCGGTCAGAGTTTT 120 Query 44323 CACGAAGATTTGCATGATG 44341 ||||||||||||||| || Sbjct 121 GACGAAGATTTGCATGTTG 139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359766432872616