Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq50967 192 1e-43 seq3519 163 7e-35 seq20012 145 2e-29 seq20890 138 3e-27 seq41025 134 3e-26 >seq50967 Length=297 Score = 192 bits (212), Expect = 1e-43 Identities = 167/205 (81%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| |||||||| || || ||||||||||| ||||||||||| || || || ||| Sbjct 297 TTCGTCAAAACTCTGACCGGCAAAACGATCACTCTCGAGGTGGAGCCATCCGATACGATC 238 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 ||||||||||| |||||||||||| |||||||||||||| || || || || || ||| Sbjct 237 GAGAACGTCAAGGCAAAGATTCAGGATAAAGAAGGAATCCCGCCAGATCAACAGCGTCTT 178 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAA 178108 |||||||||||||| ||||| |||||||| | || |||| | ||||| ||| |||| || Sbjct 177 ATCTTCGCCGGAAAGCAGCTGGAAGATGGTCGCAC-CTTGTCGGATTACAACATCCAGAA 119 Query 178109 AGAATCAACACTGCATCTTGTTTTG 178133 |||||| || |||||| | || ||| Sbjct 118 AGAATCGACTCTGCATTTGGTGTTG 94 >seq3519 Length=1813 Score = 163 bits (180), Expect = 7e-35 Identities = 147/182 (81%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 177953 AACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCA 178012 ||||||||| ||||||||||| || || || |||||||||||||| ||||||||| Sbjct 1813 AACGATCACTCTCGAGGTGGAGCCATCCGATACGATCGAGAACGTCAAGGCAAAGATTCA 1754 Query 178013 GGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGA 178072 ||| || ||||||||||| || || || || || ||||||||||||||||| ||||| || Sbjct 1753 GGATAAGGAAGGAATCCCGCCAGATCAACAGCGTCTTATCTTCGCCGGAAAGCAGCTGGA 1694 Query 178073 AGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 |||||| | || |||| | ||||| ||| |||| |||||||| || |||||| | || | Sbjct 1693 AGATGGTCGCAC-CTTGTCGGATTACAACATCCAGAAAGAATCGACTCTGCATTTGGTGT 1635 Query 178132 TG 178133 || Sbjct 1634 TG 1633 >seq20012 Length=3655 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| ||||| || || || || || |||||||| || ||| ||| Sbjct 2709 CAGATTTTCGTCAAAACGCTCACTGGGAAGACCATAACTCTCGAGGTCGAGCCCTCTGAC 2650 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || |||||| ||||| |||||||| || || || || ||||| Sbjct 2649 ACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAAGAAGGTATTCCACCAGATCAGCAG 2590 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| |||||||| || ||||| | || | | || ||||| | Sbjct 2589 CGTCTGATCTTCGCCGGCAAACAGCTGGAGGATGGTCGTACGTTGTCTGACTATAATATT 2530 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || ||||| || || || || || ||| |||| Sbjct 2529 CAGAAGGAATCTACCCTTCACCTGGTGTTGCGACT 2495 >seq20890 Length=2679 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| ||||| || || || || ||||| ||||| ||| ||| || Sbjct 1633 CAGATCTTCGTGAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTTGAACCCTCGGAT 1574 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || ||| ||||| |||||||| || || ||||| || || ||||| Sbjct 1573 ACGATCGAGAATGTGAAAGCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGATCAGCAG 1514 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || ||||| || || ||| | || || | ||||| ||| | Sbjct 1513 CGTCTGATTTTCGCCGGCAAGCAGCTGGAGGACGGACGCACGCTGTCTGATTACAACATT 1454 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 1453 CAGAAGGAGTCGACCCTTCATCTGGT 1428 >seq41025 Length=2165 Score = 134 bits (148), Expect = 3e-26 Identities = 109/132 (83%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| |||||||| || ||||| |||||||| |||||||||||| || || Sbjct 132 CAAATCTTCGTCAAAACTCTGACCGGAAAGACGATCACTCTCGAGGTGGAACCATCCGAT 73 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| |||||||||||| || ||||||||||| || || || || Sbjct 72 ACGATCGAGAACGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCAGATCAACAG 13 Query 178044 CGACTTATCTTC 178055 || ||||||||| Sbjct 12 CGTCTTATCTTC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202943896599312