Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq42053 131 2e-25 seq20890 122 8e-23 seq20012 104 2e-17 >seq42053 Length=1259 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| |||| || ||||||||||||||| |||||||| Sbjct 1235 CCACCACGCAGACGAAGGACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAGTCGGAC 1176 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || ||||||||||| ||||| |||| ||||| || || | |||| Sbjct 1175 AGGGTGCGTCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGA 1116 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||||||| ||| || |||| | | ||| || | ||| ||| Sbjct 1115 ATGCCTTCCTTGTCCTGGATCTTAGCTTTCACATTCTCGATAGTATCCGAAGGCTCGACC 1056 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || ||||| ||||| ||||| |||||||| Sbjct 1055 TCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1009 >seq20890 Length=2679 Score = 122 bits (134), Expect = 8e-23 Identities = 171/241 (71%), Gaps = 18/241 (7%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || || || | ||||||||| || || ||||||||||||||| || || | Sbjct 1408 CGCCACCACGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTGTAATCAG 1467 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 | || ||||| |||| || ||||||||||||||||| ||||| ||||| || || | || Sbjct 1468 ACAGCGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGG 1527 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCC- 41812 | | | |||||||||| || | || |||| |||| | ||| ||| ||| Sbjct 1528 GGATACCCTCCTTGTCC-TGGATCTTGGCTT--------TCACATTCTCGATCGTATCCG 1578 Query 41813 --------ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGT 41864 ||||| | || || || |||||||| || || || ||||| |||||||| | Sbjct 1579 AGGGTTCAACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTCACGAAGATCTGCATCT 1638 Query 41865 T 41865 | Sbjct 1639 T 1639 >seq20012 Length=3655 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || |||||||| || || || ||||||||||| |||||||| || Sbjct 2486 CCACCACGAAGTCGCAACACCAGGTGAAGGGTAGATTCCTTCTGAATATTATAGTCAGAC 2545 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || ||||| ||||||||||| ||||| ||||| || || | ||| Sbjct 2546 AACGTACGACCATCCTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGA 2605 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | || || ||| ||| ||| ||||| | ||||| | ||| ||| Sbjct 2606 ATACCTTCTTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTGTCAGAGGGCTCGACC 2665 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | ||||| || || || || ||||| || |||||||||||||| || Sbjct 2666 TCGAGAGTTATGGTCTTCCCAGTGAGCGTTTTGACGAAAATCTGCATCTT 2715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462009003817600