Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq17361 145 8e-30 seq8981 104 2e-17 >seq17361 Length=8649 Score = 145 bits (160), Expect = 8e-30 Identities = 404/615 (66%), Gaps = 6/615 (1%) Strand=Plus/Plus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAA-GTCGTA 16094 ||| || || || || || || || |||| | ||||| || || || | | |||| | Sbjct 537 ATCCGCGACGAACTCGATGTACTGCGACATCAGTTCGCAGTTCATGCCGAGCATGTCG-A 595 Query 16095 CCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGG 16154 |||| || || || || | || | || || ||||| ||||| || ||||| || | Sbjct 596 CCGGCAGCGCCTTGGTGAGGAACTCCTGCTCGATCACGACCGCATCGCGGATGATCTCCG 655 Query 16155 TGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGC 16214 | | || | ||||||| | || || | ||||| || || || ||||| | Sbjct 656 TCACGCGCTCCTTAGACGGTTTCTGCACCAGATACCGGAACATCAGGCAGGCAAAGTCAC 715 Query 16215 AATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTC 16274 | || ||||| ||||| | ||| || |||||||| || || | ||| |||||| | Sbjct 716 AGTGCAGTCCCTCGTCGCGCGAGATCAGCTCGTTGGAGAACGTCAGCCCCGGCATTAGGC 775 Query 16275 CTCGTTTCTTTAACCAGAATATCGCAGCAAA--TGACCCCGAAAAGAATATACCCTCAAC 16332 | || ||||| | |||||| || || ||||| || | | ||| ||| || |||||||| Sbjct 776 CGCGCTTCTTCAGCCAGAAGATAGCCGCAAAGCTGCCACTGAA--GAAAATGCCCTCAAC 833 Query 16333 AGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTG 16392 | || || || | | || ||| || | | || | || | ||||| ||| | Sbjct 834 GGCAGCGAAGGCAACCACACGCTCCCCGAAGTTGGCCTTCTTGCTGGAGATCCAGTTCAG 893 Query 16393 TACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTC 16452 |||| ||||| || | || | || | |||||| || || || |||| | ||| Sbjct 894 CGCCCAGTCGGCCTTCTTCTTGACGCACGGTAGCGTTTCGATCGCGTTGAACAGATACTC 953 Query 16453 TTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTAT 16512 || | ||| ||| ||||| || ||||| | ||||||||| ||| | Sbjct 954 CCGCTCGTTCGGGTCGCGTATGTACGTGTCGATCAGCAGCGAGTACATTTCACTGTGCAC 1013 Query 16513 GTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCAC 16572 |||||| || || |||||||| || |||||||| || ||||||| | || || ||| Sbjct 1014 GTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGGGCCTCCGTCACCTGCACCTCCTG 1073 Query 16573 GTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAA 16632 | || || ||| |||| ||||| || ||||||||||| || || || || || | Sbjct 1074 GCTGAAGCGCTCCACCAGATTCTCGTTTACGATACCGTCCGAGGCGGCGAAGAAGGCAAG 1133 Query 16633 TATGTGCTTAATGAA 16647 || |||| ||||| Sbjct 1134 TACGTGCGAGATGAA 1148 >seq8981 Length=25070 Score = 104 bits (114), Expect = 2e-17 Identities = 202/290 (70%), Gaps = 9/290 (3%) Strand=Plus/Plus Query 118930 TCGAATTTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTG-TCGTG 118988 ||| | |||||||| || || || ||||| | | |||||||||||| | ||| || || Sbjct 6393 TCGTAGTTCATGTAGCGAATTTTGCCAAAAATGTCCCGCTCCTTCCATCC-CTGATCATG 6451 Query 118989 GAGTCCTGCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACT 119047 || || || | | ||| | || || |||||||| || ||||| || || | ||| Sbjct 6452 GATGCCGGCGATCGACCACATGCACCCGACGTATCCATTCGGATCGCGCCCATCCAGACT 6511 Query 119048 CGTACTTATCGTTTAAGTAGATACAGACGCTTAACGCACTT--TCCGGAGTCTTACTCCA 119105 ||| |||||| | ||||| | || || || ||| || || || || |||| Sbjct 6512 -GTAGCGATCGTTCAGATAGATG--GCCGTTTCGAGCGCTTCCTCGGGCGTTTTCGTCCA 6568 Query 119106 TTCCAGTAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAAT 119165 || |||||||| || ||||||||||| || | |||||||||| || |||| || | Sbjct 6569 CTCTAGTATTTTCTTCGCCCAGTACATGCGCAGGAACCCGTGCATCTTGGCCTCCTTTAC 6628 Query 119166 CATCTGAAGTTGTGCGGTGTTCCATAGAGGATCGTGTGTACGGGCGTGTT 119215 | ||| || || || | |||||| ||| |||||| || |||| |||| Sbjct 6629 TAGCTGCAGCTGGGCTGCGTTCCACAGATCATCGTGCGTGTGGGC-TGTT 6677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511281598465680