Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq5408 109 5e-19 seq5576 104 2e-17 seq3192 100 2e-16 seq5552 95.1 1e-14 >seq5408 Length=43822 Score = 109 bits (120), Expect = 5e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| ||| | || |||||||| || || || || || | | Sbjct 36917 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGAC 36976 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||| ||||| || | || || | |||||| ||| || Sbjct 36977 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGG 37036 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | ||| ||||| |||||| Sbjct 37037 ATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 37096 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 || | |||||||||||| || || | |||||||| || || ||||| ||||| Sbjct 37097 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTGAA 37149 >seq5576 Length=36905 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 || || || || || | |||||||| || | |||||||||||| || || || |||||| Sbjct 18789 TTACCACCACGGAGTCGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCC 18730 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 | |||||| || | || |||||||| || || || | || || | |||||| ||| Sbjct 18729 GACAGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGA 18670 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | ||||||||| || ||||| ||||| | ||| || || |||||| Sbjct 18669 GGGATGCCTTCCTTATCCTGAATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCG 18610 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||||||||| | ||||| || || || ||||| Sbjct 18609 ACCTCAAGAGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 18560 >seq3192 Length=14073 Score = 100 bits (110), Expect = 2e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 |||||| || ||||| | ||| |||| ||||| || |||||||| || ||||| ||||| Sbjct 231 GTTTCCACCGCGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTC 172 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | ||| || | ||||||||||||| ||||| || | || || | |||||| || Sbjct 171 GGACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGG 112 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | || |||||||| |||||| || || | ||| ||||| ||||| Sbjct 111 AGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTATCCGATGGCTC 52 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATAT 21169 |||| || ||||||||||| || | ||| || || || || Sbjct 51 GACCTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGAT 7 >seq5552 Length=12584 Score = 95.1 bits (104), Expect = 1e-14 Identities = 125/173 (72%), Gaps = 8/173 (5%) Strand=Plus/Plus Query 29041 CCGCTGCACAAAGTCGCGGCCCTTGACGAGCAGCACGTACTCGCAGCGGTCGTACCAGCG 29100 |||||| | || ||||||||||| | ||| ||| || | |||| | ||||||| Sbjct 8028 CCGCTGTATGAACTCGCGGCCCTTCATCAGCTGCAGATAGTGGCAGTTGCTGTACCAGAT 8087 Query 29101 GGCGTGTTGCTGCCACGGCGCGTCGTCGGGTTCCCAATCCTTCAGACCGCCGTCGCAGCA 29160 |||||||||| ||||||| | ||||| | ||||| |||||||| || ||| | |||| Sbjct 8088 CGCGTGTTGCTCCCACGGCTCATCGTCCTGCTCCCAGTCCTTCAGCCCACCGCCACAGCT 8147 Query 29161 AAAGCAC----CGCGTCTTGTCGCCCTGGCCAGTGTAAAAGAATCCGGCCTCG 29209 ||||||| |||| |||| || || ||||| || || ||||| ||| Sbjct 8148 AAAGCACTTGACGCG----ATCGCTCTTTCCGGTGTAGAAAAAGCCGGCATCG 8196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422152291096184