Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20punctulatus_20[genbank_20GCA_5F000956255.1_202015-03-19] 20,774 sequences; 146,157,495 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq17361 558 4e-154 seq5408 131 2e-25 seq5576 127 2e-24 seq3192 118 1e-21 >seq17361 Length=8649 Score = 558 bits (618), Expect = 4e-154 Identities = 560/722 (78%), Gaps = 4/722 (1%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || || |||||||| || || |||||||||||||| ||||||| || |||| Sbjct 1237 AGGCGGAAGCTTCCTTCTGGACAGTGGAAGAGGTGGACCTGTCGAAGGACATGAAAGACT 1178 Query 116715 GGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 |||| |||| ||| | |||||| || |||||| |||||| || ||||| |||||| Sbjct 1177 GGGAATCGCTCAAACCG-AGCGAGCGTCACTTCATCTCGCACGTACTTGCCTTCTTCGCC 1119 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 ||| ||||| ||||| |||||||||||||| ||||| ||| ||||||||||||||| Sbjct 1118 GCCTCGGACGGTATCGTAAACGAGAATCTGGTGGAGCGCTTCAGCCAGGAGGTGCAGGTG 1059 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 | ||||| || ||||||||||| |||||||| || ||||||||||||||| |||||| Sbjct 1058 ACGGAGGCCCGCTGCTTCTACGGGTTTCAGATTGCGATGGAGAACGTGCACAGTGAAATG 999 Query 116894 TATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAAC 116953 || ||| || |||||||||||| | ||| || | ||| | | |||| ||| Sbjct 998 TACTCGCTGCTGATCGACACGTACATACGCGACCCGAACGAGCGGGAGTATCTGTTCAAC 939 Query 116954 GCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCC 117013 || ||||| ||| | ||||||||||| |||||||||| ||||||||| ||||||| || Sbjct 938 GCGATCGAAACGCTACCGTGCGTCAAGAAGAAGGCCGACTGGGCGCTGAACTGGATCTCC 879 Query 117014 GGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTC 117073 ||| ||||| |||||| ||||| |||| |||||||| ||||| |||||| | ||| Sbjct 878 AGCAAGAAGGCCAACTTCGGGGAGCGTGTGGTTGCCTTCGCTGCCGTTGAGGGCATTTTC 819 Query 117074 TTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTG 117133 || ||||| || || || || || ||||| ||||| |||||||| ||||| || ||| Sbjct 818 TTCAGTGGCAGCTTTGCGGCTATCTTCTGGCTGAAGAAGCGCGGCCTAATGCCGGGGCTG 759 Query 117134 ACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTG 117193 || ||| ||||||||| ||||| | |||||||| ||||| || ||||||||||| || Sbjct 758 ACGTTCTCCAACGAGCTGATCTCGCGCGACGAGGGACTGCACTGTGACTTTGCCTGCCTG 699 Query 117194 CTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGAC 117253 ||||| | || |||||||| |||| || |||||| | ||||||| || ||| Sbjct 698 ATGTTCCGGTATCTGGTGCAGAAACCGTCTAAGGAGCGCGTGACGGAGATCATCCGCGAT 639 Query 117254 GCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTC-TGCTGGGACT 117312 ||||||| ||||||||| ||||||||| | ||||||||||| || | |||| || | Sbjct 638 GCGGTCGTGATCGAGCAGGAGTTCCTCACCAAGGCGCTGCCGGT-CGACATGCTCGGCAT 580 Query 117313 CAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCT 117372 || |||||| ||||||||| ||||||||||||||||| || || ||||||| ||| | Sbjct 579 GAACTGCGAACTGATGTCGCAGTACATCGAGTTCGTCGCGGATCGGTTGCTGCTGGAGTT 520 Query 117373 GG 117374 || Sbjct 519 GG 518 >seq5408 Length=43822 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| |||||||| || ||||| ||| | || ||||| || Sbjct 37146 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 37087 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | |||| || || | ||||| ||||| ||||| |||| Sbjct 37086 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCGGAT 37027 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || ||||||| ||| ||||| |||||||| || | ||||| || ||| ||| Sbjct 37026 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTAC 36967 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || |||||||||||| | || || ||||| ||| | ||| || | || || Sbjct 36966 AATATCCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGG 36917 >seq5576 Length=36905 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| ||||| ||||| |||||||| | || ||||| || | Sbjct 18560 ATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACTCTTGAGGTCGAGCCCTCG 18619 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| || |||| || || || |||||||| |||| ||| Sbjct 18620 GACACGATCGAAAATGTGAAGGCCAAGATTCAGGATAAGGAAGGCATCCCTCCGGATCAG 18679 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| || || |||||||| || | || ||||| |||||||| Sbjct 18680 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGTACCCTGTCGGACTACAAT 18739 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| |||| || || || ||| Sbjct 18740 ATCCAGAAGGAGTCCACTCTTCACCTGGTG 18769 >seq3192 Length=14073 Score = 118 bits (130), Expect = 1e-21 Identities = 150/201 (75%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG---AC 40752 || ||||| || ||||| || ||||| |||||||| | || ||||| |||| || || Sbjct 7 ATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGA-GCCATCGGATAC 65 Query 40753 -AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811 | || | || | |||||| || || | ||||| ||||| ||||| | || ||||| Sbjct 66 GATCGAG--AATG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATCAGCA 122 Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871 || || |||| ||| ||||| |||||||| |||| ||||| || |||||||||||| Sbjct 123 GCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACAT 182 Query 40872 CCAGAAGGAGGCCACGCTGCA 40892 |||||||||| | || |||| Sbjct 183 CCAGAAGGAGTCGACCTTGCA 203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515085410454240